| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2082519 = | 254 (1.330) | 22 (0.130) | 10/142 | NT | 9.9% | intergenic (+160/+164) | aspC/USA300HOU_RS10520 | Aspartate aminotransferase/65 kDa membrane protein |
| ? | USA300TCH1516_ALE | 2082566 = | 174 (1.030) | intergenic (+207/+117) | aspC/USA300HOU_RS10520 | Aspartate aminotransferase/65 kDa membrane protein | |||||
GCTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2082617‑2082519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTG > USA300TCH1516_ALE/2082566‑2082655 GCTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTG > 2:3159006/1‑91 CTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGT < 1:3819495/91‑1 CTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGT > 1:2582156/1‑91 CTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGT < 1:1706961/91‑1 CTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGT < 1:1706904/91‑1 CTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGAATGATAGAAAAAGTTTTTTACTTTTCATCTGT < 2:3273476/91‑1 TTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC < 2:3873638/91‑1 TTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC > 2:2383594/1‑91 TTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC < 1:1913396/91‑1 TTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC > 2:2887829/1‑91 TGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCC > 1:1714463/1‑91 GAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCG < 1:2803747/91‑1 GAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCG > 2:1762408/1‑91 GAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCG > 2:1762429/1‑91 GAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCG > 2:1763071/1‑91 GAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCG > 1:1376034/1‑91 GAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCG > 1:1706350/1‑91 GAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCG > 1:1376210/1‑91 GAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCG < 1:1905284/91‑1 AATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGA > 1:3779678/1‑91 AATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGA < 2:2500346/91‑1 AATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGA > 2:1944951/1‑91 AATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGA > 1:3779641/1‑91 AATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGA > 1:3779654/1‑91 AATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGA > 1:2965249/1‑91 AATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGA < 2:2500743/91‑1 ATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGAT < 2:3823980/91‑1 ATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGAT > 2:771621/1‑91 ATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGAT < 2:3823568/91‑1 TGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATT > 2:66574/1‑91 TGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATT > 1:338059/1‑91 TGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATT < 1:364382/91‑1 GTTTGAAGTGATTTGCGAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT < 2:3718182/91‑1 GTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT > 2:349162/1‑91 GTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT < 2:3720751/91‑1 GTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT < 2:1969441/91‑1 GTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT < 2:3105791/91‑1 GTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT > 2:1155895/1‑91 GTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT < 1:968588/91‑1 AGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTG < 2:870766/63‑1 AGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTG > 1:870766/1‑63 ATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAA > 1:3539731/1‑91 AAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTTTTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAC > 1:2918043/1‑91 AAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAC > 1:654791/1‑91 AAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAC > 1:1418069/1‑91 AATCGGACTGATAGAAAACGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACA > 1:541880/1‑91 AATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACA > 2:2111076/1‑91 AATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACA > 1:2295990/1‑91 AATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACA > 2:2111163/1‑91 AATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTACTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACA > 1:3871959/1‑91 TCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCCAATCACTTCAAACATT > 2:3714132/1‑91 CGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTC > 2:3629474/1‑91 CGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTC > 2:3629533/1‑91 ACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAG > 1:135620/1‑91 GATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCAT > 1:3152202/1‑91 GATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCAT > 1:3155418/1‑91 AAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAa > 2:3853521/1‑90 AAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAT > 2:3853532/1‑91 AAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAT > 2:1796393/1‑91 AAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAT > 2:3853754/1‑91 AAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTC > 2:3878935/1‑91 TTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAA < 1:3629474/91‑1 TTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAA < 1:3629533/91‑1 GTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCC < 2:841208/91‑1 GTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCC < 1:3744312/91‑1 GTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCC < 2:841097/91‑1 GTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCC < 1:1996356/91‑1 GTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCC < 1:3461891/91‑1 TCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCC < 2:2098309/91‑1 TCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCC < 2:1408443/91‑1 TCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCC < 2:3699239/91‑1 CCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCA < 1:284989/91‑1 CGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCAC > 1:2827885/1‑91 CGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCAC > 2:2067277/1‑91 CGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCAC > 2:518354/1‑91 CGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCAC < 2:1359545/91‑1 GATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACG > 2:918226/1‑91 GATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACG < 1:3832073/91‑1 ATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGA > 2:3423225/1‑91 ATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGA < 2:1774027/91‑1 ATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGA > 1:1894016/1‑91 ATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGA > 1:1341195/1‑91 ATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGA > 1:1340869/1‑91 ATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGA > 1:1340655/1‑91 TTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGAT > 2:2776171/1‑91 TTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATT < 2:2178126/91‑1 TTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATT < 1:2914046/91‑1 TTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATT < 1:2913950/91‑1 TATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTG > 2:2452651/1‑91 TATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTG > 2:1603572/1‑91 TATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTG < 1:3042664/91‑1 TATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTG < 1:1897890/91‑1 GCTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2082617‑2082519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTG > USA300TCH1516_ALE/2082566‑2082655 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |