New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2082519 =254 (1.330)22 (0.130) 10/142 NT 9.9% intergenic (+160/+164) aspC/USA300HOU_RS10520 Aspartate aminotransferase/65 kDa membrane protein
?USA300TCH1516_ALE 2082566 = 174 (1.030)intergenic (+207/+117) aspC/USA300HOU_RS10520 Aspartate aminotransferase/65 kDa membrane protein

Only 100 of 310 total aligned reads displayed.

CTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGT  >  USA300TCH1516_ALE/2082476‑2082656
                                                                                          |                                                                                          
  ataCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATttatt                                                                                          >  1:1157267/1‑91 (MQ=255)
  ataCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATttatt                                                                                          >  2:458328/1‑91 (MQ=255)
  ataCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATttatt                                                                                          >  2:3282697/1‑91 (MQ=255)
  ataCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATttatt                                                                                          <  2:2173622/91‑1 (MQ=255)
   taCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATttatta                                                                                         <  2:704576/91‑1 (MQ=255)
   taCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATttatta                                                                                         <  2:1133986/91‑1 (MQ=255)
    aCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTtattat                                                                                        >  1:621219/1‑91 (MQ=255)
      cTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAg                                                                                      <  1:2559293/91‑1 (MQ=255)
         aTTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAAc                                                                                   <  2:2336372/91‑1 (MQ=255)
            aGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCaa                                                                                <  2:2700679/91‑1 (MQ=255)
             gTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAt                                                                               >  1:659479/1‑91 (MQ=255)
             gTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAt                                                                               >  1:1774027/1‑91 (MQ=255)
                 tataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtat                                                                           <  2:2487252/91‑1 (MQ=255)
                   taCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtatat                                                                         <  2:911120/91‑1 (MQ=255)
                    aCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtatata                                                                        <  1:3309349/91‑1 (MQ=255)
                    aCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtatata                                                                        <  1:1980050/91‑1 (MQ=255)
                    aCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtatata                                                                        <  1:3047442/91‑1 (MQ=255)
                     cATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATaa                                                                       >  2:3682599/1‑91 (MQ=255)
                      aTCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAAc                                                                      >  2:3169468/1‑91 (MQ=255)
                       tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                                     >  2:3648663/1‑91 (MQ=255)
                          ctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACtttt                                                                  >  1:2017794/1‑91 (MQ=255)
                            ccTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAg                                                                                      <  1:580672/69‑1 (MQ=255)
                            ccTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAg                                                                                      >  2:580672/1‑69 (MQ=255)
                             cTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGc                                                               <  1:364255/91‑1 (MQ=255)
                             cTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGc                                                               >  1:1921902/1‑91 (MQ=255)
                              tAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCa                                                              >  1:1574245/1‑91 (MQ=255)
                               aaCAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCATTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCaa                                                             <  2:3616903/91‑1 (MQ=255)
                               aaCAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCaa                                                             <  2:2640105/91‑1 (MQ=255)
                                 cAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAAt                                                           <  2:798032/91‑1 (MQ=255)
                                   aaaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCa                                                         >  1:963290/1‑91 (MQ=255)
                                   aaaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCa                                                         >  1:3396972/1‑91 (MQ=255)
                                    aaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATCACTTTTGGCAAATCAc                                                        >  2:2975901/1‑91 (MQ=255)
                                    aaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCAc                                                        >  1:2285931/1‑91 (MQ=255)
                                    aaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCAc                                                        >  1:3806683/1‑91 (MQ=255)
                                     aTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACt                                                       <  2:668569/91‑1 (MQ=255)
                                     aTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACt                                                       <  1:1713305/91‑1 (MQ=255)
                                      tCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACtt                                                      <  2:3462167/91‑1 (MQ=255)
                                       cAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTc                                                     >  2:3042933/1‑91 (MQ=255)
                                       cAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTc                                                     <  1:2365/91‑1 (MQ=255)
                                        aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATc                                                          <  2:2536077/85‑1 (MQ=255)
                                        aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa                                                    >  1:1086362/1‑91 (MQ=255)
                                        aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa                                                    >  1:3100980/1‑91 (MQ=255)
                                         ataaatcggactgatagaaaaagttttttacttttcatctgtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaa                                                   >  1:3539731‑M2/50‑91 (MQ=255)
                                         aaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaa                                                   >  1:2667948/1‑91 (MQ=255)
                                         aaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaa                                                   >  1:1884464/1‑91 (MQ=255)
                                          aaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaaa                                                  >  1:32912/1‑91 (MQ=255)
                                           aaatcggactgatagaaaaagttttttacttttcatctgtccgatttTTTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAc                                                 >  1:2918043‑M2/48‑91 (MQ=255)
                                           aaatcggactgatagaaaaagttttttacttttcatctgtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAc                                                 >  1:1418069‑M2/48‑91 (MQ=255)
                                           AAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAc                                                 <  2:3720751‑M1/91‑1 (MQ=255)
                                            aatcggactgatagaaaaagttttttacttttcatctgtccgatttACTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACa                                                >  1:3871959‑M2/47‑91 (MQ=255)
                                             ATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACAt                                               <  2:3823980‑M1/91‑1 (MQ=255)
                                              TCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACAtt                                              >  1:3779654‑M1/1‑91 (MQ=255)
                                              TCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACAtt                                              >  2:1944951‑M1/1‑91 (MQ=255)
                                              TCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACAtt                                              >  1:2965249‑M1/1‑91 (MQ=255)
                                               CGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTc                                             <  1:1905284‑M1/91‑1 (MQ=255)
                                               CGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTc                                             >  1:1706350‑M1/1‑91 (MQ=255)
                                               CGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTc                                             <  1:2803747‑M1/91‑1 (MQ=255)
                                               CGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTc                                             >  2:1762408‑M1/1‑91 (MQ=255)
                                                  actgatagaaaaagttttttacttttcatctgtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAg                                          >  1:135620‑M2/41‑91 (MQ=255)
                                                   CAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                                     >  1:870766‑M1/1‑63 (MQ=255)
                                                   CAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGc                                         >  2:3159006‑M1/1‑91 (MQ=255)
                                                    aGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCa                                        <  1:2191710/91‑1 (MQ=255)
                                                     gatagaaaaagttttttacttttcatctgtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCAt                                       >  1:3155418‑M2/38‑91 (MQ=255)
                                                       tGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATcc                                     >  1:3200075/1‑90 (MQ=255)
                                                       tGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATca                                     >  1:1383808/1‑91 (MQ=255)
                                                       tGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATca                                     <  2:2229441/91‑1 (MQ=255)
                                                       tGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATca                                     <  2:3322363/91‑1 (MQ=255)
                                                         aaaaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATcaca                                   >  1:1485987/1‑91 (MQ=255)
                                                          aaaaagttttttacttttcatctgtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAt                                  >  2:3853754‑M2/33‑91 (MQ=255)
                                                           aaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAtc                                 <  1:1441607/91‑1 (MQ=255)
                                                           aaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAtc                                 <  2:1053862/91‑1 (MQ=255)
                                                           aaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAtc                                 <  1:347363/91‑1 (MQ=255)
                                                               aaaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTa                             >  1:2878532/1‑91 (MQ=255)
                                                                 aaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACa                           >  1:3688164/1‑91 (MQ=255)
                                                                   aaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACaaa                         >  1:2307141/1‑91 (MQ=255)
                                                                    aCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAAt                        <  1:2422606/91‑1 (MQ=255)
                                                                      tttttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGt                      <  2:3881688/91‑1 (MQ=255)
                                                                      tttttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGt                      <  1:2140396/91‑1 (MQ=255)
                                                                       ttttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTa                     >  2:2290459/1‑91 (MQ=255)
                                                                       ttttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTa                     <  1:2586690/91‑1 (MQ=255)
                                                                        ttttcatctgtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTaa                    <  1:3629474‑M2/73‑1 (MQ=255)
                                                                         ttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAA                   >  1:1539180‑M1/1‑91 (MQ=255)
                                                                           cTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAG                 >  2:1350513‑M1/1‑91 (MQ=255)
                                                                            tATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGG                >  2:2031817‑M1/1‑91 (MQ=255)
                                                                               cAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAc             <  2:15059/91‑1 (MQ=255)
                                                                                 gtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAccc           <  1:3744312‑M2/82‑1 (MQ=255)
                                                                                 gtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAccc           <  2:841208‑M2/82‑1 (MQ=255)
                                                                                  tccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAcccc          <  2:3699239‑M2/83‑1 (MQ=255)
                                                                                  tccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAcccc          <  2:2098309‑M2/83‑1 (MQ=255)
                                                                                   ccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCa         <  1:284989‑M2/84‑1 (MQ=255)
                                                                                    cgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCAc        >  2:518354‑M2/7‑91 (MQ=255)
                                                                                     gatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACg       <  1:3832073‑M2/86‑1 (MQ=255)
                                                                                      atttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGa      <  2:1774027‑M2/87‑1 (MQ=255)
                                                                                      atttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGa      >  1:1340655‑M2/5‑91 (MQ=255)
                                                                                      atttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGa      >  2:3423225‑M2/5‑91 (MQ=255)
                                                                                       tttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGAt     >  2:2776171‑M2/4‑91 (MQ=255)
                                                                                         tATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTg   >  2:1603572‑M2/2‑91 (MQ=255)
                                                                                         tATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTg   <  1:3042664‑M2/90‑1 (MQ=255)
                                                                                          attatAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATtgt  <  2:2134209/91‑1 (MQ=255)
                                                                                          attatAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATtgt  >  2:2418146/1‑91 (MQ=255)
                                                                                          |                                                                                          
CTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGT  >  USA300TCH1516_ALE/2082476‑2082656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.