| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2357381 = | 144 (0.760) | 23 (0.140) | 11/140 | NT | 15.4% | intergenic (‑331/+207) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 |
| ? | USA300TCH1516_ALE | 2357417 = | 126 (0.760) | intergenic (‑367/+171) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 | |||||
AAGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2357479‑2357381‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGCT > USA300TCH1516_ALE/2357417‑2357506 AAGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTA > 1:3706210/1‑91AAGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTA < 1:2322111/91‑1 AGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAA > 2:957690/1‑91 AGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAA > 2:1387801/1‑91 GATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAG > 1:3478631/1‑91 GATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAG < 1:142538/91‑1 TTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTC > 1:3769472/1‑91 TTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTC < 2:3025984/91‑1 TTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCC < 2:880453/91‑1 TTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCC > 2:2708876/1‑91 TTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCC > 2:2705677/1‑91 TTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCC < 2:1186549/91‑1 TTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCC < 2:1966892/91‑1 TAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCG < 1:2136008/91‑1 TAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCG > 2:3185009/1‑91 TAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCG < 2:827909/91‑1 AAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGA < 1:1217141/91‑1 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 2:977883/1‑91 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 1:3785211/1‑91 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 1:3784742/1‑91 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 1:310065/1‑91 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 1:2757684/1‑91 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 1:1946380/1‑91 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 1:1831354/1‑91 GAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGA > 2:2484468/1‑84 GAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGA < 1:2484468/84‑1 AATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACG > 2:105084/1‑91 ATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGC > 2:544046/1‑91 ATCGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTT > 1:2225027/1‑91 ATCGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCACATCATAAGTTTGTTGAGTTCACGCTT > 2:3200769/1‑91 TCGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTT > 1:1403796/1‑91 CGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTA > 1:281853/1‑91 CGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTA > 1:281757/1‑91 ACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAT > 1:517947/1‑91 ACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAT > 2:1238492/1‑91 ACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAT > 2:1238450/1‑91 ACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAT > 2:3062020/1‑91 ACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAT > 1:517923/1‑91 ACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAT > 1:516463/1‑91 TATGAACAGAAATGTTTTTACGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTT > 1:3756385/1‑91 ATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTT > 1:2498793/1‑91 ATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTT > 1:46542/1‑91 TGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTA > 2:472358/1‑91 TGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTA > 2:472987/1‑91 TGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTA > 2:1059891/1‑91 TGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTA > 2:1059860/1‑91 GAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTAT > 1:3556781/1‑91 GAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTAT > 1:3556731/1‑91 ACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAACAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTT > 1:3279899/1‑91 TTTTTAAGTCCGATATTTTATTCAATAAAAACGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGG > 1:1368744/1‑91 TAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTA < 2:318439/91‑1 AAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTAC < 2:2922983/91‑1 AAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTAC < 2:2923070/91‑1 AAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTAC < 2:824628/91‑1 AGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTACATCTTTATTTAGTTGATGGGGTACT > 1:3605133/1‑91 GTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTC < 1:1065825/91‑1 GTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTC < 1:2034479/91‑1 CCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTG > 2:2865817/1‑91 CGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGA < 2:1616313/91‑1 ATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC > 1:1892471/1‑91 ATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC > 1:1892888/1‑91 ATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC > 2:1862434/1‑91 TATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGCT > 2:3592938/1‑91 AAGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2357479‑2357381‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGCT > USA300TCH1516_ALE/2357417‑2357506 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |