| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2357381 = | 144 (0.760) | 23 (0.140) | 11/140 | NT | 15.4% | intergenic (‑331/+207) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 |
| ? | USA300TCH1516_ALE | 2357417 = | 126 (0.760) | intergenic (‑367/+171) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 | |||||
Only 100 of 208 total aligned reads displayed.
AACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGCTA > USA300TCH1516_ALE/2357328‑2357507 | gcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCATAAGTCCGatat > 2:544046‑M1/54‑91 (MQ=255) cgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtt > 2:105084‑M1/53‑91 (MQ=255) aCTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATTTAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtt < 1:3087481/91‑1 (MQ=255) tAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtttt < 1:2787295/91‑1 (MQ=255) tAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtttt < 1:3050743/91‑1 (MQ=255) gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt > 1:1969944/1‑91 (MQ=255) ttCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTc < 1:527908/91‑1 (MQ=255) catcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCaa < 2:1796336/91‑1 (MQ=255) catcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCaa < 1:115850/91‑1 (MQ=255) catcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCaa > 1:2453315/1‑91 (MQ=255) catATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATaa < 2:228997/91‑1 (MQ=255) tatTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATaaaa > 2:1100642/1‑91 (MQ=255) ttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTGAATAAAAAAgcg > 2:3219689/1‑91 (MQ=255) ttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcg > 1:2708876/1‑91 (MQ=255) ttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcg > 1:2003564/1‑91 (MQ=255) aGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcgcg > 1:1355173/1‑91 (MQ=255) gATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcgcgc > 1:320814/1‑91 (MQ=255) gATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcgcgc < 2:1015143/91‑1 (MQ=255) gATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAAT‑AAAAAGCGCGCa > 2:2494334/1‑91 (MQ=255) ttCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAc > 2:1946380/1‑91 (MQ=255) tCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAcc < 1:3723010/91‑1 (MQ=255) cGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAccc < 2:173297/91‑1 (MQ=255) gCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAcccc > 1:1440616/1‑91 (MQ=255) gCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAcccc < 1:85445/91‑1 (MQ=255) gCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAcccc < 2:3207074/91‑1 (MQ=255) cACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCca > 1:1392568/1‑91 (MQ=255) cACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCca < 1:2812756/91‑1 (MQ=255) cTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatc < 1:629766/91‑1 (MQ=255) tCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatca < 2:769097/91‑1 (MQ=255) gcAAAAAAGTAAATATAGAGAAATCGGACTTAAAGACATTTCTGTTCAGAAGTCCGATATGTTATTCAATAAAAAAGCGCGCACCCcatca < 2:3316092/90‑1 (MQ=255) cAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatcat < 1:1861006/91‑1 (MQ=255) cAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatcat < 1:2680849/91‑1 (MQ=255) cAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatcat < 2:1401261/91‑1 (MQ=255) cAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatcat < 2:1073665/91‑1 (MQ=255) cAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatcat > 2:2187335/1‑91 (MQ=255) aaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAg > 2:1339327/1‑91 (MQ=255) aaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAg < 1:3431783/91‑1 (MQ=255) aaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGt > 2:3492917/1‑91 (MQ=255) aaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGtt < 1:2276899/91‑1 (MQ=255) gTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttg > 1:1722511/1‑91 (MQ=255) aaaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgtt < 1:1569009/91‑1 (MQ=255) aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg > 2:3347106/1‑91 (MQ=255) aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg > 2:3036562/1‑91 (MQ=255) aaTATAAAGAAACCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttattg > 1:2999961/1‑91 (MQ=255) atatAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGa < 2:1594664/91‑1 (MQ=255) atatAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGa > 2:760128/1‑91 (MQ=255) tataAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAg < 2:2038872/91‑1 (MQ=255) aaaTCGGACTTAAACACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc < 2:2668532/91‑1 (MQ=255) aaaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc < 2:849999/91‑1 (MQ=255) aaaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc > 2:432408/1‑91 (MQ=255) aaaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc < 1:2875948/91‑1 (MQ=255) aaaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc > 1:3187767/1‑91 (MQ=255) ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt > 1:1946380‑M1/1‑91 (MQ=255) ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt > 1:2757684‑M1/1‑91 (MQ=255) ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt > 1:3785211‑M1/1‑91 (MQ=255) TCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTc < 1:2484468‑M1/84‑1 (MQ=255) TCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCttt < 1:1217141‑M1/91‑1 (MQ=255) cggacttatgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTa > 1:281853‑M2/35‑91 (MQ=255) CGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTa < 1:2136008‑M1/91‑1 (MQ=255) GGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTaa > 2:2708876‑M1/1‑91 (MQ=255) GGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTaa < 2:1186549‑M1/91‑1 (MQ=255) acttatgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAt > 1:517947‑M2/32‑91 (MQ=255) acttatgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAt > 1:516463‑M2/32‑91 (MQ=255) acttatgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAt > 2:1238450‑M2/32‑91 (MQ=255) CTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATc < 1:142538‑M1/91‑1 (MQ=255) TTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCt > 2:957690‑M1/1‑91 (MQ=255) tatgaacagaaatgtttttacgtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtt > 1:3756385‑M2/29‑91 (MQ=255) TAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtt < 1:2322111‑M1/91‑1 (MQ=255) atgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCttt > 1:46542‑M2/28‑91 (MQ=255) atgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCttt > 1:2498793‑M2/28‑91 (MQ=255) tgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCttta > 2:472987‑M2/27‑91 (MQ=255) tgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCttta > 2:1059860‑M2/27‑91 (MQ=255) aaaaCATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCttta > 2:2346498/1‑91 (MQ=255) gaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttat > 1:3556781‑M2/26‑91 (MQ=255) aaaCATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttat < 2:2189266/91‑1 (MQ=255) aaaCATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttat < 2:2458511/91‑1 (MQ=255) acagaaatgtttttaagtccgatATTTTATTCAATAACAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttattt > 1:3279899‑M2/24‑91 (MQ=255) cATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttattta < 1:3233003/91‑1 (MQ=255) cATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttattta < 1:797464/91‑1 (MQ=255) aTTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAg < 1:3782546/91‑1 (MQ=255) tttCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGt > 2:3007754/1‑91 (MQ=255) tCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTg > 2:2480317/1‑91 (MQ=255) tCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTg > 1:3498698/1‑91 (MQ=255) cTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGa < 2:319842/91‑1 (MQ=255) cTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGa < 2:1620710/91‑1 (MQ=255) tGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGAt > 1:1679419/1‑91 (MQ=255) gTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATg < 2:3377647/91‑1 (MQ=255) cATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATgggg > 1:1046091/1‑91 (MQ=255) cATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATgggg < 2:1243116/91‑1 (MQ=255) aTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGt < 1:2539967/91‑1 (MQ=255) aTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGt < 2:1912029/91‑1 (MQ=255) taagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTa < 2:318439‑M2/81‑1 (MQ=255) aagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTAc < 2:2922983‑M2/82‑1 (MQ=255) aagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTAc < 2:824628‑M2/82‑1 (MQ=255) agtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTACATCTTTATTTAGTTGATGGGGTAct > 1:3605133‑M2/9‑91 (MQ=255) gtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTActc < 1:2034479‑M2/84‑1 (MQ=255) gtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTActc < 1:1065825‑M2/84‑1 (MQ=255) ccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTg > 2:2865817‑M2/6‑91 (MQ=255) atATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGc > 1:1892471‑M2/3‑91 (MQ=255) atATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGc > 2:1862434‑M2/3‑91 (MQ=255) | AACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGCTA > USA300TCH1516_ALE/2357328‑2357507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |