| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2368663 = | 153 (0.800) | 20 (0.110) | 12/148 | NT | 12.8% | intergenic (‑16/+51) | rpsS/rplB | 30S ribosomal protein S19/50S ribosomal protein L2 |
| ? | USA300TCH1516_ALE | 2368705 = | 131 (0.740) | intergenic (‑58/+9) | rpsS/rplB | 30S ribosomal protein S19/50S ribosomal protein L2 | |||||
AAATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2368758‑2368663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGTTT > USA300TCH1516_ALE/2368705‑2368794 AAATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGCGTGCGGCTTAAAGCTGCACGCACATA < 2:1177481/91‑1 AATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAA < 2:1985623/91‑1 AATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAA > 2:202344/1‑91 AATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAA < 2:1391548/91‑1 AATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAA > 2:3098412/1‑91 AATCATCAGACAAACTTATCGTTCGTGGAAGAAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAA < 2:58358/91‑1 ATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAAT < 1:2066581/91‑1 TCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATA < 1:1654266/91‑1 TCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATA < 1:2337609/91‑1 TCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATA < 1:886011/91‑1 CATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAA > 2:878086/1‑91 CATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAA > 2:2616239/1‑91 CATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAA < 1:3088851/91‑1 ATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAG > 2:3643334/1‑91 ATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAG < 1:3545317/91‑1 ATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAG < 2:3430429/91‑1 ATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAG > 2:1732022/1‑91 AGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCAC > 2:705822/1‑91 TAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATA > 1:3563624/1‑91 AATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAA > 1:729971/1‑91 ATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAG > 2:831826/1‑91 ATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAG > 2:831878/1‑91 CTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGAT > 1:1474030/1‑91 CTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGAT > 1:1473937/1‑91 TATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGA > 1:1429774/1‑91 TATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGA > 1:1377349/1‑91 TTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATT > 2:2675607/1‑91 TTTGGGTGTGCGGCTCAAAGCTGCACGCACATAATAAGTTGATTATATTAGTTTTTCTTCCGTCCCCGAACGATACGCTTGTCTGATGCTT > 2:3486264/1‑91 TTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTT > 2:1873299/1‑91 TGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGTATGATAAGTTTGTCTGATGTTTTT > 2:1996290/1‑91 TGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTT > 2:1996379/1‑91 GGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTT > 2:2528601/1‑91 GGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTT > 2:323153/1‑91 GGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTT > 1:435020/1‑91 GGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTT > 1:2840854/1‑91 GCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCAC > 1:3823692/1‑91 AAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGT < 1:705822/91‑1 ccagATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTAACCAAGC > 2:3444090/5‑91 CATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGC < 2:729971/91‑1 AATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTA > 2:463108/1‑91 AATAAGTTGATTATATTATGTTTTCTTACGTCCACGTACGACAAGCTTGTCCGCTGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTA > 2:1359197/1‑91 ATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACTACGACGAGTTTTCTTACCAAGCGTAG > 2:2407671/1‑91 TAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGG > 2:2299760/1‑91 AGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGTT < 2:1917023/91‑1 GTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGTTT < 2:2380793/91‑1 GTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGTTT < 1:950777/91‑1 GTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGTTT < 1:1991441/91‑1 AAATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2368758‑2368663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGTTT > USA300TCH1516_ALE/2368705‑2368794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |