| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2388299 | 158 (0.830) | 15 (0.100) | 8/126 | NT | 9.6% | intergenic (+34/+68) | ribZ_1/sarV | Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV |
| ? | USA300TCH1516_ALE | = 2388344 | 158 (1.060) | intergenic (+79/+23) | ribZ_1/sarV | Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV | |||||
TTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2388193‑2388299‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaagcatgccaatcAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCATGG < USA300TCH1516_ALE/2388344‑2388255 TTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAAT < 1:2103667/91‑1TTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAAT < 1:2103588/91‑1 TTAGCAATCATTGCTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATA > 1:2982410/1‑91 GCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAA > 1:1462185/1‑91 GCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAA > 2:1269862/1‑91 GCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAA > 1:3553950/1‑91 CAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAA > 1:302982/1‑91 CAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAA > 2:2064379/1‑91 CAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAA > 1:2494912/1‑91 AATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAG < 1:2519056/91‑1 ATCATTACTATGCTTGGTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGC < 2:3703296/91‑1 TCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGta < 1:1720154/91‑3 TCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGta > 2:1720154/1‑89 CATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCAT > 1:645941/1‑91 CATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCAT > 1:956658/1‑91 TTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGC > 2:1719620/1‑91 TTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGC < 2:1501046/91‑1 TTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGC > 2:2690203/1‑91 TACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGATATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCC < 2:2130675/91‑1 TACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCC < 1:2777564/91‑1 TACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCC < 1:2136905/91‑1 TACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCC > 1:1557039/1‑91 ACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCA > 2:1973570/1‑91 CTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAA > 2:2548912/1‑91 CTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAA > 1:767068/1‑91 CTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAA < 2:2468018/91‑1 TATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTATAAATGCCATGAACTAAATATTTATATTAAAAAATAAAAAGCATGCCAAT < 2:3411415/91‑1 TATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAAT > 2:1887259/1‑91 TATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAAT < 2:2488323/91‑1 TATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAAT < 2:2488163/91‑1 TATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAAT < 2:3204258/91‑1 GCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGA < 2:734241/91‑1 GAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTG < 2:3781634/91‑1 GAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTG < 2:913071/91‑1 CTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCA < 2:2435163/91‑1 CTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCA < 1:978893/91‑1 CTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCA < 1:3040420/91‑1 TAAATATTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCAT < 2:300246/91‑1 AAATATTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATG < 1:221117/91‑1 AATGTTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATACTTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGC < 1:3497676/91‑1 AATATTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGC < 2:126514/91‑1 AATATTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGC < 1:2350702/91‑1 AATATTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGC < 2:2489091/91‑1 ATATTTATATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCT < 2:3343107/91‑1 TATTTCTATTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTT < 2:3143737/91‑1 TATTTATAGTCAAAAATAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACATACAAATGATGAATAGAGATTGGCATGCTT < 2:3378200/91‑1 TAACAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATA < 1:3130748/91‑1 AAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAA > 1:1241253/1‑91 AAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAA > 2:2091687/1‑91 AAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAA < 2:931797/91‑1 AAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATG > 1:3708258/1‑54 AAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATG < 2:3708258/54‑1 AAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGCGATTGGCATGCTTTCTATTTTTGAATATAAAT > 1:3322534/1‑91 AAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAAT > 1:304588/1‑91 AAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAAT < 2:1917408/91‑1 AAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAAT < 2:63312/91‑1 AAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATA > 1:1391062/1‑91 GCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATT > 2:1488703/1‑91 GCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATT < 1:3092196/91‑1 CATGCCACTCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTT < 1:1932472/91‑1 CATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTT < 2:3425727/91‑1 CATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTT < 2:1377771/91‑1 ATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTA > 1:1269862/1‑91 ATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTA > 2:327953/1‑91 GCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAAT > 2:875877/1‑78 GCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAAT < 1:875877/78‑1 CCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTT > 1:1850841/1‑91 CCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTT > 2:3393175/1‑91 CCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTT > 2:325163/1‑91 CCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATCTTTGAATATAACTATTTAGTT > 2:2176989/1‑91 CAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTC > 1:389773/1‑91 CAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTC < 1:240504/91‑1 CAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTC > 2:189117/1‑91 CAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTC < 2:2363542/91‑1 AATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCA < 2:1322288/91‑1 AATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCA < 1:76036/91‑1 AATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCA < 2:30995/91‑1 AATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCA > 2:1557039/1‑91 AATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCA < 2:202762/91‑1 ATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCAT < 1:59933/91‑1 ATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCAT < 2:1440016/91‑1 ATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCAT < 2:1783922/91‑1 CAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCATGG < 1:2576509/91‑1 CAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCATGG < 1:1497982/91‑1 TTTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2388193‑2388299‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaagcatgccaatcAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCATGG < USA300TCH1516_ALE/2388344‑2388255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |