BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2388299	158 (0.830)	15 (0.100)	8/126	NT	9.6%	intergenic (+34/+68)	ribZ_1/sarV	Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV
*	?	USA300TCH1516_ALE	= 2388344	158 (1.060)	15 (0.100)	8/126	NT	9.6%	intergenic (+79/+23)	ribZ_1/sarV	Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV

Only 100 of 233 total aligned reads displayed.

GCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTAC  >  USA300TCH1516_ALE/2388254‑2388434

gCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACt                                                                                            <  2:1779174/91‑1 (MQ=255)

 ccATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTg                                                                                           <  1:2576509‑M2/91‑2 (MQ=255)

 ccATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTg                                                                                           <  1:1497982‑M2/91‑2 (MQ=255)

   aTGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgat                                                                                         <  1:59933‑M2/91‑4 (MQ=255)

    tGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgatt                                                                                        <  2:30995‑M2/91‑5 (MQ=255)

    tGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgatt                                                                                        >  2:1557039‑M2/1‑87 (MQ=255)

    tGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgatt                                                                                        <  1:76036‑M2/91‑5 (MQ=255)

     gAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattg                                                                                       <  2:2363542‑M2/91‑6 (MQ=255)

     gAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattg                                                                                       >  1:389773‑M2/1‑86 (MQ=255)

      aaCTAAATATTTATATTCAGAGATAAGAAGCATGCCAATCTCTATTCATCAGTTGTCTGGCCCCAAGATGCAATTATGCTGTACTGATTgg                                                                                      <  2:2248693/91‑1 (MQ=255)

      aaCTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattgg                                                                                      >  2:3393175‑M2/1‑85 (MQ=255)

      aaCTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattgg                                                                                      >  1:1850841‑M2/1‑85 (MQ=255)

         tAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcat                                                                                   >  2:327953‑M2/1‑82 (MQ=255)

         tAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcat                                                                                   >  1:1269862‑M2/1‑82 (MQ=255)

          aaaTATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatg                                                                                  <  2:1377771‑M2/91‑11 (MQ=255)

              atTTATATTCAAAAATAGAAAGCATGCCAATCGCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttt                                                                              >  1:3322534‑M2/1‑77 (MQ=255)

              atTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttt                                                                              >  1:304588‑M2/1‑77 (MQ=255)

              atTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttt                                                                              <  2:1917408‑M2/91‑15 (MQ=255)

               tttATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttt                                                                             <  2:931797‑M2/91‑16 (MQ=255)

                ttATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttttt                                                                            >  2:2091687‑M2/1‑75 (MQ=255)

                 tataTTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttgtta                                                                           <  1:3130748‑M2/91‑18 (MQ=255)

                   tatTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAg                                                                         >  1:2379971/1‑91 (MQ=255)

                    atTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggc                                                                                     >  2:875877‑M2/1‑71 (MQ=255)

                    atTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGt                                                                        <  1:1783922/91‑1 (MQ=255)

                    atTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGt                                                                        >  1:3690591/1‑91 (MQ=255)

                      tCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGttt                                                                      <  1:407786/91‑1 (MQ=255)

                       cAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGtttt                                                                     >  1:1228030/1‑91 (MQ=255)

                         aaaaTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTa                                                                   <  1:806535/91‑1 (MQ=255)

                         aaaaTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTa                                                                   <  2:660416/91‑1 (MQ=255)

                           aaTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGttttt                                                                    <  1:3768401/88‑1 (MQ=255)

                            aTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGtt                                                                <  2:2819516/91‑1 (MQ=255)

                              aaaaaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTg                                                              >  2:1315335/1‑91 (MQ=255)

                              aaaaaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTg                                                              >  2:1345924/1‑91 (MQ=255)

                               aaaaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGt                                                             <  2:1462185/91‑1 (MQ=255)

                                 aaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTaa                                                           >  2:2163450/1‑91 (MQ=255)

                                  aGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAAc                                                          <  1:2919644/91‑1 (MQ=255)

                                  aGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAAc                                                          >  2:687869/1‑91 (MQ=255)

                                   gCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatt                                                         <  1:2350702‑M2/91‑36 (MQ=255)

                                   gCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatt                                                         <  2:126514‑M2/91‑36 (MQ=255)

                                   gCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAAGTATGATGTACTgattggcatgctttttatttttgaatataaacatt                                                         <  1:3497676‑M2/91‑36 (MQ=255)

                                    cATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatattt                                                        <  1:221117‑M2/91‑37 (MQ=255)

                                     aTGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCt                                                       <  2:3857267/91‑1 (MQ=255)

                                      tGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttag                                                      <  1:978893‑M2/91‑39 (MQ=255)

                                      tGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTATTTAGTTTGTAATGCtt                                                      >  2:1046561/1‑91 (MQ=255)

                                        ccAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTaa                                                    <  1:1651567/91‑1 (MQ=255)

                                           aTCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAacac                                                 <  2:2700773/91‑1 (MQ=255)

                                            tctcTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACt                                                <  2:832708/91‑1 (MQ=255)

                                            tctcTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACt                                                <  1:3200121/91‑1 (MQ=255)

                                            tctcTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACt                                                <  2:3770861/91‑1 (MQ=255)

                                            tctcTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACt                                                <  2:1722330/91‑1 (MQ=255)

                                            tctcTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACt                                                <  2:3553950/91‑1 (MQ=255)

                                             ctctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACtt                                               <  2:3762914/91‑1 (MQ=255)

                                             ctctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACtt                                               <  2:2576509/91‑1 (MQ=255)

                                             ctctATTCATCATTTGACTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACtt                                               <  2:2982410/91‑1 (MQ=255)

                                              tctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttagttcatggc                                              <  2:734241‑M2/91‑47 (MQ=255)

                                              tctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTc                                              >  1:1933607/1‑91 (MQ=255)

                                                tATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTa                                            >  1:867604/1‑91 (MQ=255)

                                                tATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTa                                            <  1:114489/91‑1 (MQ=255)

                                                tATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTa                                            >  1:1423450/1‑91 (MQ=255)

                                                 aTTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTAt                                           <  1:679059/91‑1 (MQ=255)

                                                  ttCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTAtt                                          <  2:1799210/91‑1 (MQ=255)

                                                  ttCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTAtt                                          >  2:2008740/1‑91 (MQ=255)

                                                     atcatTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCt                                       <  2:2678867/91‑1 (MQ=255)

                                                      tcatTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCtt                                      >  1:3673542/1‑91 (MQ=255)

                                                      tcatTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCtt                                      >  2:271110/1‑91 (MQ=255)

                                                       catTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCttt                                     <  2:571736/91‑1 (MQ=255)

                                                       catTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCttt                                     <  1:2006916/91‑1 (MQ=255)

                                                        atTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTa                                    >  1:3250080/1‑91 (MQ=255)

                                                         tttGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAg                                   <  2:1648403/91‑1 (MQ=255)

                                                         tttGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAg                                   <  2:1133839/91‑1 (MQ=255)

                                                          ttGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGt                                  >  1:2958794/1‑91 (MQ=255)

                                                           tgtctgtcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTa                                 >  2:3628713/1‑91 (MQ=255)

                                                             tctgtcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAAt                               <  2:302982/91‑1 (MQ=255)

                                                              ctgtcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAAtt                              >  2:504663/1‑91 (MQ=255)

                                                              ctgtcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAAtt                              >  2:3243200/1‑91 (MQ=255)

                                                              ctgtcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAAtt                              >  2:1717627/1‑91 (MQ=255)

                                                                  ccccAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTAt                          >  1:1830211/1‑91 (MQ=255)

                                                                   cccAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATc                         <  1:1104326/91‑1 (MQ=255)

                                                                     cAAGATGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTa                       <  2:3145617/91‑1 (MQ=255)

                                                                     cAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTa                       >  1:2802176/1‑91 (MQ=255)

                                                                     cAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTa                       <  2:2093770/91‑1 (MQ=255)

                                                                     cAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTa                       >  2:3427261/1‑91 (MQ=255)

                                                                        gACGCAATTATGATGTACTGATTGGCATGCTTCTTAAGTCTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACa                    >  2:3512984/1‑91 (MQ=255)

                                                                          cGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAAt                  <  1:1708549/91‑1 (MQ=255)

                                                                          cGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAAt                  >  2:429157/1‑91 (MQ=255)

                                                                          cGCAATCATGATGTACTGATTGGCATGCTTTTTCAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAAt                  >  1:1066783/1‑91 (MQ=255)

                                                                           gCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAAtt                 >  2:2560452/1‑91 (MQ=255)

                                                                            cAATTATGATGTACTGATTGGCATGCTTTTTTAGTGCTTCGTCTGTAACGCTTAACACTTCTACTTCTTTAGTAATTTTATCTCACACttt                >  2:3454298/1‑91 (MQ=255)

                                                                             aaTTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTc               <  1:1218685/91‑1 (MQ=255)

                                                                              aTTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCt              <  2:181975/91‑1 (MQ=255)

                                                                              aTTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCt              <  1:1012563/91‑1 (MQ=255)

                                                                              aTTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCt              <  1:2745623/91‑1 (MQ=255)

                                                                                tATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCttt            <  1:2425559/91‑1 (MQ=255)

                                                                                 atgatgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAGCACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCtttt           <  1:3366311/91‑1 (MQ=255)

                                                                                   gatgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTga         <  1:1560431/91‑1 (MQ=255)

                                                                                   gatgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTga         <  2:2476469/91‑1 (MQ=255)

                                                                                     tgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTgaga       <  1:1973570/91‑1 (MQ=255)

                                                                                      gTACTGATTGGTATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGaa      <  1:3522656/91‑1 (MQ=255)

                                                                                      gTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGaa      >  2:1926581/1‑91 (MQ=255)

                                                                                      gTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGaa      >  2:1584538/1‑91 (MQ=255)

GCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTAC  >  USA300TCH1516_ALE/2388254‑2388434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.