| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2442806 = | 127 (0.670) | 19 (0.130) | 14/128 | NT | 16.9% | intergenic (+3/+55) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein |
| ? | USA300TCH1516_ALE | 2442855 = | 86 (0.570) | intergenic (+52/+6) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein | |||||
TGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2442910‑2442806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTC > USA300TCH1516_ALE/2442855‑2442944 cGATGTTTGATAAGATGTACCACGTTATCGAAACATGAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT < 2:3838465/90‑1TGATGTTTGATAAGATGTACCACGTTATCGAAACATTAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT < 2:3838127/91‑1TGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT > 2:2004004/1‑91 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC > 1:3766152/1‑91 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC > 1:3766309/1‑91 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC > 1:837070/1‑91 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTAATGATAGGCTCAAGGCCATCAAAcc > 2:2477848/1‑89 GATGCTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC < 2:2118444/91‑1 ATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCA < 1:2275659/91‑1 TGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCAT > 1:2272161/1‑91 GTTTGGTAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATA < 2:2557532/91‑1 GTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATA > 1:832208/1‑91 TTTGATAAGATGTACCACGTTATCGAAACATCAACACCACAATAAAATGATAAAAGGAAGTTATGTTAGGCTCAAGGCCATTAAATCATAA < 1:3396607/91‑1 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA < 2:2285409/91‑1 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA > 1:3622984/1‑91 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA > 1:2110204/1‑91 TTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAAC > 1:297786/1‑91 TTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAAC > 2:3275802/1‑91 TTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAAC > 1:1454195/1‑91 TTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAAC > 1:3146799/1‑91 TTGATAAGATATACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAAC < 2:2462178/91‑1 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT < 1:402896/91‑1 GATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTT < 2:924020/91‑1 AAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCT > 2:2821544/1‑91 AGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTT < 1:95811/91‑1 AGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTT < 2:2426323/91‑1 GATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTT < 1:3855828/91‑1 ATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT > 1:2588804/1‑91 ATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT > 1:2584278/1‑91 ATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT < 1:1995852/91‑1 ACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGT > 2:2167725/1‑91 ACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGT > 2:2167619/1‑91 GATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTA > 1:1487162/1‑91 ATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTTTTTATTGTTGTGTTGATGTTTCGATAACGTGGTAC > 2:2768408/1‑91 ATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTAC > 2:2768422/1‑91 AAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTCGATGTTTCGATAACGTGGTACATCT > 2:3355334/1‑91 AGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTT > 1:1150509/1‑91 GGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTA > 1:658997/1‑91 GAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTAT > 1:404962/1‑91 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCA > 1:2060258/1‑91 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCA > 1:2136/1‑91 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCA > 1:3712839/1‑91 TTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAA > 1:956447/1‑91 ATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCA > 1:501082/1‑91 TAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAA > 1:3020105/1‑91 AGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAAT < 2:658997/91‑1 CTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCG > 2:1328704/1‑91 CTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCG > 1:2737072/1‑91 GCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCA > 1:519807/1‑91 ATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCAT < 2:667762/91‑1 ATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGC > 1:574629/1‑91 ATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGC < 1:2309221/91‑1 ATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGC < 1:2309220/91‑1 ATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGC > 2:797143/1‑91 TAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCc > 2:1684840/1‑90 TAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCA > 2:2886493/1‑91 TAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCA > 2:2886633/1‑91 ACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 2:2457394/1‑91 ACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 2:2422664/1‑91 ACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 2:3422294/1‑91 ACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 1:2276128/1‑91 TTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCAT < 1:973481/91‑1 TCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATG > 2:2327665/1‑91 TCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATG < 2:1536388/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 2:3539006/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 2:1003793/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA > 2:2368162/1‑91 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 2:2311071/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 2:1994329/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 1:605290/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA > 1:143651/1‑91 CTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGAT < 2:2909954/91‑1 CTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGAT > 2:3267699/1‑91 CTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGAT > 2:1336870/1‑91 TTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATA < 2:2459673/91‑1 TTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATA > 2:1028790/1‑91 TTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATA < 1:2985748/91‑1 TATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTC < 2:2355932/91‑1 TATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTC > 1:2874670/1‑91 TGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2442910‑2442806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTC > USA300TCH1516_ALE/2442855‑2442944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |