| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2442821 | 131 (0.690) | 10 (0.070) | 8/128 | NT | 9.5% | intergenic (+18/+40) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2442838 | 86 (0.570) | intergenic (+35/+23) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein | |||||
TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2442716‑2442821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggaagttatgatAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTT < USA300TCH1516_ALE/2442838‑2442749 TTCTAGCTTCATCAGTTATCATATATTCTTTTAAACACTTGTAATAAAATATACTGACTATTTACTACATAATGATATTTCAAATTAGAAA < 1:3098160/91‑1TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAA > 2:993338/1‑91TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAA > 1:1073485/1‑91TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAA > 1:1372984/1‑91TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAA > 1:2986368/1‑91TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAA < 1:1559746/91‑1TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAA > 1:2986965/1‑91 TCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCATATTAGAAAA > 2:3695944/1‑91 TAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAA > 1:950633/1‑91 GCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTCCTACATAATGATATTTCAAATTAGAAAAAAGG > 1:2945836/1‑91 GCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGG > 1:2892604/1‑91 GCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGG < 1:1018415/91‑1 GCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGG > 2:2306947/1‑91 GCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGG > 2:3340773/1‑91 GCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGG > 2:584352/1‑91 TTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAA > 1:850763/1‑91 TTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAA > 1:670712/1‑91 TTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAA < 1:3698335/91‑1 TTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAA > 2:2503590/1‑91 CATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGT > 1:462203/1‑91 CATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGT > 2:1957804/1‑91 CATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGT < 1:1029284/91‑1 ATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTT < 2:3238517/91‑1 TCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTA < 2:434479/91‑1 TCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTA < 1:3372514/91‑1 TCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTAAAATTAGAAAAAAGGAAGTTA < 2:58527/91‑1 CAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTAT > 2:3298979/1‑91 GTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGA > 2:2985748/1‑91 GTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGA > 1:542578/1‑91 TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT > 1:2873883/1‑91 TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT > 2:3709452/1‑91 TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT > 1:1536388/1‑91 TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT < 2:3339453/91‑1 TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT < 2:3339387/91‑1 TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT < 2:304407/91‑1 TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT > 2:2845466/1‑91 TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT < 2:1898749/91‑1 ACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT < 1:192947/91‑1 TGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA < 2:821883/91‑1 TGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA < 2:2620352/91‑1 AAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTT < 1:2839626/91‑1 AAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTT < 2:3103901/91‑1 AAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTT < 1:2205726/91‑1 ATATAATGAGTATTTACTACATAATGATATTGCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT < 2:3358848/91‑1 ATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTT < 2:966297/91‑1 AATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCT < 2:2296454/91‑1 GTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTT < 1:2460495/91‑1 TAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCAT < 2:1514433/91‑1 AAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATAT < 2:885825/91‑1 AAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATAT > 1:1815736/1‑91 AAAAGGAAGCTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTGATTATAT > 1:1947446/1‑91 AAAAGGAAGATATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTAATTATAT > 1:1947401/1‑91 AAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATT > 1:2460270/1‑91 AAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCGTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATT < 2:1588094/91‑1 AAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTT > 2:2267329/1‑91 AAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTC < 2:2148572/50‑1 AAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTC > 1:2148572/1‑50 AGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTT > 2:1230270/1‑91 AGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTT > 1:3530465/1‑91 GGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTC < 2:3553061/91‑1 GGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTC < 1:1907665/91‑1 GGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATACCATTATGTAGTAAATACTCATTATATTTTC > 2:3348150/1‑91 GAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAGATATCATTATGTAGTAAATACTCATTATATTTTCT < 1:2164706/91‑1 GAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCT > 2:737286/1‑91 GAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCT < 1:412710/91‑1 AAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTT > 1:3687683/1‑91 AAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTT < 1:524971/91‑1 AAGTTATGATAGGCTAAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTT < 2:2289724/91‑1 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTA < 2:431738/91‑1 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTA < 2:1050684/91‑1 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTA > 1:3848289/1‑91 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTA > 2:2619820/1‑91 TTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACA > 1:2132251/1‑91 TTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACA > 1:2131112/1‑91 TTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACA < 2:2447711/91‑1 TTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACA < 2:2447800/91‑1 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG < 2:401786/91‑1 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG < 2:209955/91‑1 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG < 2:453971/91‑1 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG > 1:2491065/1‑91 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG > 2:73615/1‑91 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG > 1:740051/1‑91 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG < 1:727030/91‑1 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG > 2:2986368/1‑91 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG < 2:210081/91‑1 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG < 1:3811610/91‑1 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG > 2:2986965/1‑91 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG < 2:3216895/91‑1 TGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGT > 2:984200/1‑91 TGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGT > 2:2973299/1‑91 GATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTG < 1:3649638/91‑1 GATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTG < 2:605290/91‑1 ATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGT < 2:3089217/91‑1 ATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAAT < 1:3168142/66‑1 ATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAAT > 2:3168142/1‑66 ATAGGCTCAAGGCCATTAAATCATAACTTCCTATTATCTAATTAGCAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGT > 1:1482689/1‑91 TAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTT > 2:926686/1‑91 TAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTT < 2:310654/91‑1 TAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTT < 2:649136/91‑1 TAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTT < 1:1229393/91‑1 TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2442716‑2442821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggaagttatgatAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTT < USA300TCH1516_ALE/2442838‑2442749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |