| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2533545 | 159 (0.830) | 16 (0.090) | 11/142 | NT | 9.8% | intergenic (+41/+56) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | = 2533585 | 153 (0.910) | intergenic (+81/+16) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2533447‑2533545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaccacgTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGACG < USA300TCH1516_ALE/2533585‑2533496 GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAA > 1:3797653/1‑91 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAACTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 2:3194471/1‑91 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAACTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:801209/1‑91 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:136314/1‑91 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:248383/1‑91 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGAAAACATAACAAAG > 2:3231997/1‑91 CTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTGGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGA < 2:3186830/91‑1 CTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTGGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGA < 2:3186819/91‑1 TATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAA < 1:2920876/91‑1 ATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAAC > 2:2061351/1‑91 ATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAAC < 1:3051157/91‑1 TCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 1:207993/91‑1 TCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 1:2658361/91‑1 CAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCA < 2:2941296/91‑1 CAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCA > 1:899581/1‑91 AAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAGCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC < 2:1400166/91‑1 AAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC < 2:2972423/91‑1 AAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC > 1:1090982/1‑91 AAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC < 2:1860194/91‑1 AAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC < 2:3285420/91‑1 AACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACG < 2:3485048/91‑1 TACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGAATCAT > 1:1667071/1‑91 ATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTA > 2:2011739/1‑91 AACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGAT < 2:1874681/91‑1 ACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATG < 1:3518108/91‑1 CGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGC < 1:2156244/91‑1 GTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCG < 1:2011739/91‑1 GTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCG < 1:1339213/91‑1 TCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGT < 1:209935/91‑1 TCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC > 1:3614764/1‑47 TCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC < 2:3614764/47‑1 CGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTG < 1:867682/91‑1 CGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTG < 2:1458537/91‑1 GTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGG < 2:3788981/91‑1 GTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGG < 2:1065259/91‑1 TAAAATATCGCTCCAAGATTATGACAACATAACAAATAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTT < 2:3500295/91‑1 AAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTC < 2:543373/91‑1 AAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTC < 2:3085585/91‑1 AAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATTATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCT < 2:306654/91‑1 AGAACCAGGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTT < 2:3459025/91‑1 AGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTTGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTT < 2:3459075/91‑1 AGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTT < 2:3459054/91‑1 gacCCACGTATCATGGTTTAGTAGGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGGTATGTTGTCATAATCTTGGAGCGATATTTT < 1:532798/88‑1 GAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTT < 2:3644410/91‑1 GAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTT < 2:3643613/91‑1 AACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTA < 1:2689684/91‑1 ACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAA > 1:822797/1‑91 ACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAA > 1:822060/1‑91 ACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAA > 2:1682007/1‑91 CCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAAC > 2:2205367/1‑91 CCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAAC > 2:2205553/1‑91 CCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAAC > 2:2206055/1‑91 CACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACG > 1:1423776/1‑91 CACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACG > 1:3379405/1‑91 CACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACG < 1:2855370/91‑1 ACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGA < 1:3793771/91‑1 ACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGA > 1:823463/1‑91 ACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGA < 1:905910/91‑1 CGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGAC < 1:231235/91‑1 GTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGACG < 1:1717481/91‑1 GTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGACG < 2:3156652/91‑1 GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2533447‑2533545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaccacgTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGACG < USA300TCH1516_ALE/2533585‑2533496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |