| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2533545 | 159 (0.830) | 16 (0.090) | 11/142 | NT | 9.8% | intergenic (+41/+56) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | = 2533585 | 153 (0.910) | intergenic (+81/+16) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
Only 100 of 296 total aligned reads displayed.
AACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTA > USA300TCH1516_ALE/2533455‑2533635 | ggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACg < 1:240189‑M1/9‑1 (MQ=255) aCCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGc > 1:881616/1‑91 (MQ=255) aTTACTATATAAAGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatc > 1:2979054/1‑91 (MQ=255) ttACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatca > 2:950145/1‑91 (MQ=255) ttACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatca < 1:3668206/91‑1 (MQ=255) tACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGaatcat > 1:1667071‑M1/1‑85 (MQ=255) agaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGcatcat > 2:2925238‑M1/77‑91 (MQ=255) aCTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATg > 2:1733252/1‑91 (MQ=255) tatataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta < 2:2735716/91‑1 (MQ=255) tatataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta > 1:3622322/1‑91 (MQ=255) atataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGtat < 1:704930/91‑1 (MQ=255) atataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGtat > 1:443582/1‑91 (MQ=255) atataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGtat > 1:217564/1‑91 (MQ=255) ataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgtttta > 2:2011739‑M1/1‑79 (MQ=255) ataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTatat > 1:2010963/1‑91 (MQ=255) aaGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATgg > 2:3262024/1‑91 (MQ=255) ggTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGGCAACATAACAAAGAACCACGCATCATGTATATGGCt < 1:3713867/91‑1 (MQ=255) ggTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCt > 1:1193035/1‑91 (MQ=255) cAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCAt > 1:2123661/1‑91 (MQ=255) aaaCGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATc > 1:1760288/1‑91 (MQ=255) aCGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGc > 1:2071039/1‑91 (MQ=255) aCGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGc > 1:3815270/1‑91 (MQ=255) aCGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGc > 1:417890/1‑91 (MQ=255) tACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCAt > 2:712403/1‑91 (MQ=255) aCTTTAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGc < 1:31773/79‑1 (MQ=255) cTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATAc > 1:632162/1‑91 (MQ=255) cTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATAc > 1:3500163/1‑91 (MQ=255) tAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTa > 1:3250349/1‑91 (MQ=255) tAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTa > 2:1115413/1‑91 (MQ=255) aaTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTaaa > 2:2876752/1‑91 (MQ=255) gaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGTATCATGTATATGGCTTCATCGCCATACTAAAAc > 2:2780792‑M1/49‑91 (MQ=255) aagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACa > 2:1033122‑M1/48‑91 (MQ=255) agaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt > 1:1413393‑M1/47‑91 (MQ=255) agaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt < 2:1413393‑M1/45‑1 (MQ=255) aTAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt < 1:1901224/91‑1 (MQ=255) aaaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACTACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGa < 2:2941865/91‑1 (MQ=255) aaaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTa > 2:1309710/1‑83 (MQ=255) aaaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACGTGa < 2:3444093/91‑1 (MQ=255) aaaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGa < 2:223457/91‑1 (MQ=255) aaaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGa > 2:1074684/1‑91 (MQ=255) aaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgat < 2:1874681‑M1/91‑40 (MQ=255) aaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGAt < 1:220083/91‑1 (MQ=255) aaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGAt < 1:1621307/91‑1 (MQ=255) ttaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATa > 2:1193490‑M1/43‑91 (MQ=255) cgtcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAc < 2:3156652‑M2/91‑2 (MQ=255) gtcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcg < 1:1339213‑M1/91‑43 (MQ=255) aagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACg > 1:3444507‑M1/41‑91 (MQ=255) cgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtg < 1:2855370‑M2/91‑5 (MQ=255) cgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtg > 1:3379405‑M2/1‑87 (MQ=255) gtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtgg < 2:3788981‑M1/91‑46 (MQ=255) gtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtgg > 2:2205367‑M2/1‑86 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggt > 1:822060‑M2/1‑85 (MQ=255) aaaaTATCGCTCCAAGATTATGACAACATACCAAAGAACCACGCATCATGTATATGGCTTCATCGCCCTACTAAACCATGATAcgtgggtc < 1:532798‑M2/91‑9 (MQ=255) aaaaTATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttc < 2:543373‑M1/91‑49 (MQ=255) aaaaTATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttc < 2:3085585‑M1/91‑49 (MQ=255) aaaaTATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttc < 2:3644410‑M2/91‑9 (MQ=255) aaaTATCGCTCCAAGATTATGACAACATAACAAAGAACAACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttct < 2:3459075‑M2/91‑10 (MQ=255) tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg < 1:1116892/91‑1 (MQ=255) cGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGa < 1:847999/91‑1 (MQ=255) gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat > 1:1493949/1‑91 (MQ=255) cTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatt < 1:3477779/91‑1 (MQ=255) tCCAAGATTATGACAACATAACAAAGAACCACGCATCCCGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatta > 1:1832150/1‑91 (MQ=255) tCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatta < 1:3195520/91‑1 (MQ=255) ccAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat < 1:1955144/91‑1 (MQ=255) ccAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGCGGTTCTATTTGattat < 1:1043543/91‑1 (MQ=255) gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatta < 1:2457562/86‑1 (MQ=255) gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttctt > 1:2768013/1‑91 (MQ=255) gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttctt > 2:547200/1‑91 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 2:3423862/1‑91 (MQ=255) tGACAACATAACAATGAACCACGCGTCATTTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAttt < 2:1060441/91‑1 (MQ=255) tGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAttt < 2:2347244/91‑1 (MQ=255) gACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTta > 2:3010726/1‑91 (MQ=255) agaataatcaaatAGAACCACGTATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTta > 1:172819‑M1/14‑91 (MQ=255) acaacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat > 1:274398/1‑91 (MQ=255) caTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACa < 2:2565934/91‑1 (MQ=255) caaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAttt > 2:3801667‑M1/6‑91 (MQ=255) aaCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAttt < 2:2125313/91‑1 (MQ=255) aaCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAttt > 2:3189914/1‑91 (MQ=255) aCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAAGATACGTGGTTCTATTTGATTATTCTTCATCTATAACATTTa > 2:3765263/1‑91 (MQ=255) cAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTaa < 2:899130/91‑1 (MQ=255) cAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTaa < 1:3133778/91‑1 (MQ=255) aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa < 1:1482842/91‑1 (MQ=255) aGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattt < 2:3459054‑M1/91‑83 (MQ=255) aGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATAATAcgtggttctttgttatgttgtcataatcttggagcgatattt < 2:306654‑M2/91‑43 (MQ=255) gAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatatttt < 2:3643613‑M1/91‑84 (MQ=255) aaCCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatatttta < 1:2689684‑M1/91‑85 (MQ=255) AACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAAc > 2:2614030‑M1/1‑91 (MQ=255) aCCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattttaa > 2:1682007‑M1/1‑6 (MQ=255) ccACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattttaac > 2:2206055‑M1/1‑5 (MQ=255) CCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGt > 1:1580039‑M1/1‑91 (MQ=255) cACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacg < 1:867682‑M2/91‑48 (MQ=255) CACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTc > 2:1493949‑M1/1‑91 (MQ=255) aCGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattttaacga > 1:823463‑M1/1‑3 (MQ=255) ACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCt > 2:1588351‑M1/1‑91 (MQ=255) cGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattttaacgac < 1:231235‑M1/91‑90 (MQ=255) CGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt < 2:425848‑M1/91‑1 (MQ=255) gtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacg < 1:1717481‑M1/91‑91 (MQ=255) GCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTa < 2:3508393‑M1/91‑1 (MQ=255) GCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTa < 2:3491777‑M1/91‑1 (MQ=255) GCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTa > 1:3779856‑M1/1‑91 (MQ=255) | AACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTA > USA300TCH1516_ALE/2533455‑2533635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |