| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2541808 = | 202 (1.060) | 27 (0.170) | 18/136 | NT | 15.4% | intergenic (+67/‑433) | sbi/hlgA | Immunoglobulin‑binding protein sbi/Gamma‑hemolysin component A |
| ? | USA300TCH1516_ALE | 2541850 = | 126 (0.780) | intergenic (+109/‑391) | sbi/hlgA | Immunoglobulin‑binding protein sbi/Gamma‑hemolysin component A | |||||
GTTGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2541909‑2541808‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGAA > USA300TCH1516_ALE/2541850‑2541939 gtgGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAA < 2:294932/88‑1GTTGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAA < 1:111831/91‑1 TTGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGATCCGTAGATTCGATTGAGAATCAAC > 2:1102176/1‑91 TTGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGATCCGTAGATTCGATTGAGAATCAAC > 2:1101973/1‑91 TTGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAAC > 2:103720/1‑91 TTGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAAC > 2:104066/1‑91 TGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACG < 2:2198882/91‑1 TGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACG < 2:2198600/91‑1 TGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACG < 1:2167248/91‑1 TGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACG < 2:2197834/91‑1 TGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACG < 1:1614594/91‑1 GCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGG > 2:1065832/1‑91 GCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGG > 2:3036873/1‑91 GCAGGTAAAAAAGGGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGG > 2:3551157/1‑91 CAGGTAAAAAAGTGGGCTGCCAAATAGCGAAGAAGCATTTAATCGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGT > 2:1261777/1‑91 CAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAATCGTAGATTCGATTGAGAATCAACGGT < 2:2208235/91‑1 CAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGT > 1:1045142/1‑91 CAGGT‑AAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTT > 2:3322306/1‑91 AGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTT < 1:3765417/91‑1 AGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTT < 2:200620/91‑1 AGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTT > 1:1315306/1‑91 AGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTT > 1:1315290/1‑91 AGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTT > 1:1314370/1‑91 AGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTT > 2:1802921/1‑91 AGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTT < 1:3765707/91‑1 AGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTT > 1:3766372/1‑91 AAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTT > 2:2934679/1‑91 AAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTT < 1:2461617/91‑1 AAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTT > 2:3408825/1‑91 AAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATAAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTT > 2:3408842/1‑91 AAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTT > 2:67921/1‑91 AAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTT > 1:1518944/1‑91 ATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCG > 1:2436029/1‑91 ATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTC > 2:1536699/1‑91 GAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTT > 1:1312260/1‑91 AAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTT > 1:3535390/1‑91 AAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTT > 1:3535422/1‑91 AAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTT > 1:3344843/1‑91 AGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTAC > 1:2710466/1‑91 GAACCGTAGATTCGATTGAGAATCGACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACC > 2:3866743/1‑91 GAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACC > 2:250287/1‑91 AACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCCCTTTTTTACCT > 2:1717253/1‑91 AACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCT > 2:1804136/1‑91 AACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCT > 1:546482/1‑91 AACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCT > 1:1648780/1‑91 ACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTG > 1:3579212/1‑91 CCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGC > 1:3243528/1‑91 CCGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGC > 2:876701/1‑91 CGTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCA > 2:847131/1‑91 GTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAA > 1:1006127/1‑91 GTAGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAA > 1:1005837/1‑91 AGATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACT > 2:2518016/1‑91 GATTCGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTT > 2:1402978/1‑91 CGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTA > 2:2505182/1‑91 CGATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTA > 1:3086153/1‑91 GATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAA > 1:2022096/1‑91 ATTGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAA > 1:3328867/1‑91 TGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATA > 1:3286817/1‑91 TGAGAATCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATA > 1:3286837/1‑91 TCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTT > 2:2823728/1‑91 TCAACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTT > 2:1655401/1‑91 ACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACA > 1:586530/1‑91 ACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACA < 1:1239851/91‑1 ACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACA < 1:2789109/91‑1 ACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACA < 2:1574711/91‑1 GGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATC < 2:3867130/91‑1 GGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATC < 2:700860/91‑1 TTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGT > 1:2374451/1‑91 TTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGT > 1:1793125/1‑91 TTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGT < 2:3484914/91‑1 TCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTT < 2:1679806/91‑1 TTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAA < 1:1143259/91‑1 TTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAA < 1:3377690/91‑1 TTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAA > 1:340669/1‑91 TTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAA < 1:3377585/91‑1 TTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAA < 1:1142952/91‑1 TTTTTTCATTTTCCATCAATGAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAA < 1:1211978/91‑1 TTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAAC < 2:1141624/91‑1 TTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACG > 1:549842/1‑91 TTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACG > 1:2781604/1‑91 TTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCC < 1:556913/45‑1 TTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCC > 2:556913/1‑45 TTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGA < 1:1324635/91‑1 TTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGA < 2:2037753/91‑1 TTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCAACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGA < 2:730110/91‑1 TTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGAA < 1:728867/91‑1 TTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGAA < 1:1342563/91‑1 TTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGAA < 1:1403529/91‑1 TTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGAA < 1:2036848/91‑1 TTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGAA > 1:349666/1‑91 GTTGCAGGTAAAAAAGTGGGCTGACAAATAGCGAAGAAGCATTTAATTGATGGAAAATGAAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2541909‑2541808‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGAA > USA300TCH1516_ALE/2541850‑2541939 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |