BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2541808 =	202 (1.060)	27 (0.170)	18/136	NT	15.4%	intergenic (+67/‑433)	sbi/hlgA	Immunoglobulin‑binding protein sbi/Gamma‑hemolysin component A
*	?	USA300TCH1516_ALE	2541850 =	126 (0.780)	27 (0.170)	18/136	NT	15.4%	intergenic (+109/‑391)	sbi/hlgA	Immunoglobulin‑binding protein sbi/Gamma‑hemolysin component A

Only 100 of 254 total aligned reads displayed.

TCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGAA  >  USA300TCH1516_ALE/2541760‑2541939

tctAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCtttttt                                                                                           >  2:3354925/1‑91 (MQ=255)

 ctAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTc                                                                                          >  2:174930/1‑91 (MQ=255)

 aagtgggctgacaaatagcgaagaagcatttaattgatggaaaatgaAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTc                                                                                          >  1:1312260‑M1/48‑91 (MQ=255)

  tAGTTTTGCATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTATCa                                                                                         <  2:3440790/91‑1 (MQ=255)

  tAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCa                                                                                         <  2:1907547/91‑1 (MQ=255)

    gTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCAtt                                                                                       >  2:2056701/1‑91 (MQ=255)

     ttttACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCAttt                                                                                      <  1:3591933/91‑1 (MQ=255)

     ttttACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCAttt                                                                                      >  1:712153/1‑91 (MQ=255)

     ttttACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCAttt                                                                                      >  2:1458035/1‑91 (MQ=255)

      tttACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCAtttt                                                                                     <  2:745181/91‑1 (MQ=255)

       ttACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTc                                                                                    >  1:1782989/1‑91 (MQ=255)

         aCATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCa                                                                                  >  1:1523406/1‑91 (MQ=255)

          catcatTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCAt                                                                                 >  1:1392698/1‑91 (MQ=255)

           atcatTTTTTAAATAATTTTCGTTACAAACCGTGATTAAAAAGAACCATTGATTCTCAATCGAATCTACTGTTCTTTATTTATTTTCGATc                                                                                >  2:3632495/1‑91 (MQ=255)

           atcatTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATc                                                                                >  2:3863418/1‑91 (MQ=255)

             catTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCaa                                                                              >  1:516432/1‑91 (MQ=255)

             catTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCaa                                                                              >  1:2419646/1‑91 (MQ=255)

                 ttttAAATAATTTTCGTAACAAACCGTGATTAAAAATAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTaa                                                                          <  2:3467973/91‑1 (MQ=255)

                   ttAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAAt                                                                        >  2:1342563/1‑91 (MQ=255)

                    tAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCCTCAATTAAATg                                                                       >  1:309847/1‑91 (MQ=255)

                    tAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATg                                                                       >  1:278268/1‑91 (MQ=255)

                    tAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATg                                                                       >  1:279079/1‑91 (MQ=255)

                     aaaTAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGc                                                                      <  1:99998/91‑1 (MQ=255)

                     aaaTAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGc                                                                      >  1:944201/1‑91 (MQ=255)

                      aataatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGct                                                                     >  2:648997/1‑91 (MQ=255)

                      aataatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGct                                                                     <  1:854177/91‑1 (MQ=255)

                      aataatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGct                                                                     >  1:746946/1‑91 (MQ=255)

                       ataatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGctt                                                                    >  2:1581248/1‑91 (MQ=255)

                       ataatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGctt                                                                    >  2:451671/1‑91 (MQ=255)

                       ataatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGctt                                                                    <  1:3794181/91‑1 (MQ=255)

                        taatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGcttc                                                                   >  2:3075887/1‑91 (MQ=255)

                         aatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGcttct                                                                  <  1:1458035/91‑1 (MQ=255)

                         aatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGcttct                                                                  <  2:1186815/91‑1 (MQ=255)

                                gTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAt                                                           >  2:1370813/1‑91 (MQ=255)

                                gTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAt                                                           <  1:1013197/91‑1 (MQ=255)

                                 tAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAtt                                                          >  2:729041/1‑91 (MQ=255)

                                 tAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTCTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAtt                                                          >  2:3058562/1‑91 (MQ=255)

                                     atggaaaatgaaaaaagaaccgtagattcgattgagaatcaacggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTc                                                      >  2:1536699‑M2/54‑91 (MQ=255)

                                     aaaCCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTc                                                      <  1:3030701/91‑1 (MQ=255)

                                     aaaCCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTc                                                      >  1:3194927/1‑91 (MQ=255)

                                       aCCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAg                                                    <  1:1900256/91‑1 (MQ=255)

                                          gTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGccc                                                 <  2:3799506/91‑1 (MQ=255)

                                          gTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGccc                                                 >  1:3669819/1‑91 (MQ=255)

                                           tGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCa                                                <  1:3375755/91‑1 (MQ=255)

                                             aTTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACt                                              <  1:3486900/91‑1 (MQ=255)

                                               tAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACttt                                            >  2:1138322/1‑91 (MQ=255)

                                               tAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACttt                                            <  1:1823998/91‑1 (MQ=255)

                                                 aaaagaaccgtagattcgattgagaatcaacggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACttttt                                          >  1:3535422‑M2/42‑91 (MQ=255)

                                                 AAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACttttt                                          >  1:1518944‑M1/1‑91 (MQ=255)

                                                  AAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACtttttt                                         >  2:2934679‑M1/1‑91 (MQ=255)

                                                  AAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACtttttt                                         <  1:2461617‑M1/91‑1 (MQ=255)

                                                     gaaccgtagattcgattgagaatcgacggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTAcc                                      >  2:3866743‑M2/38‑91 (MQ=255)

                                                     gaaccgtagattcgattgagaatcaacggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTAcc                                      >  2:250287‑M2/38‑91 (MQ=255)

                                                      aaccgtagattcgattgagaatcaacggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCt                                     >  1:1648780‑M2/37‑91 (MQ=255)

                                                      AACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCt                                     >  1:1315290‑M1/1‑91 (MQ=255)

                                                      AACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCt                                     <  1:3765707‑M1/91‑1 (MQ=255)

                                                       ACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCGATTAAATGCTTCTTCGCTATTTGGCAGCCCACTTTTTTACCTg                                    >  2:1261777‑M1/1‑91 (MQ=255)

                                                       ACCGTTGATTCTCAATCGAATCTACGATTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTg                                    <  2:2208235‑M1/91‑1 (MQ=255)

                                                        ccgtagattcgattgagaatcaacggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGc                                   >  2:876701‑M2/35‑91 (MQ=255)

                                                        ccgtagattcgattgagaatcaacggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGc                                   >  1:3243528‑M2/35‑91 (MQ=255)

                                                        CCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGc                                   >  2:3036873‑M1/1‑91 (MQ=255)

                                                        CCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGc                                   >  2:1065832‑M1/1‑91 (MQ=255)

                                                         CGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCa                                  <  1:1614594‑M1/91‑1 (MQ=255)

                                                         CGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCa                                  <  2:2198600‑M1/91‑1 (MQ=255)

                                                          gtagattcgattgagaatcaacggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCaa                                 >  1:1005837‑M2/33‑91 (MQ=255)

                                                          GTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCaa                                 >  2:103720‑M1/1‑91 (MQ=255)

                                                             gATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACtt                              >  2:3015813/1‑91 (MQ=255)

                                                               ttCTCAGTCGAATCTACGGTTCTTTTTTCATTTTCCATCTATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGt                            <  2:1998593/91‑1 (MQ=255)

                                                               ttCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGt                            <  2:778785/91‑1 (MQ=255)

                                                                 ctcAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTa                          >  1:1122987/1‑91 (MQ=255)

                                                                  gattgagaatcaacggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTaa                         >  1:2022096‑M2/25‑91 (MQ=255)

                                                                   attgagaatcaacggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTaaa                        >  1:3328867‑M2/24‑91 (MQ=255)

                                                                    aaTCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAaat                       <  1:2097106/91‑1 (MQ=255)

                                                                     tgagaatcaacggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAaata                      >  1:3286837‑M2/22‑91 (MQ=255)

                                                                      tCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAaataa                     <  1:2466892/91‑1 (MQ=255)

                                                                       cGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAaataat                    >  1:2336588/1‑91 (MQ=255)

                                                                        gAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATc                   <  2:2153251/91‑1 (MQ=255)

                                                                          aTCTACGGTTCTTTTTTCATTTTCCATCAATTAAATACTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCt                 <  2:1704483/91‑1 (MQ=255)

                                                                           tcaacggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCtt                >  2:2823728‑M2/16‑91 (MQ=255)

                                                                           tCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCtt                >  2:627370/1‑91 (MQ=255)

                                                                           tCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCtt                >  2:2491901/1‑91 (MQ=255)

                                                                            cTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTa               <  2:1782989/91‑1 (MQ=255)

                                                                            cTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTa               <  1:3851275/91‑1 (MQ=255)

                                                                             tACGGTTCTTTTTTCATTTTTTATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTAc              >  2:3192565/1‑91 (MQ=255)

                                                                             tACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATATTCCTTAc              <  1:3773058/91‑1 (MQ=255)

                                                                             tACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTAc              <  1:2709437/91‑1 (MQ=255)

                                                                             tACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTAc              <  2:2577756/91‑1 (MQ=255)

                                                                             tACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTAc              <  2:1523406/91‑1 (MQ=255)

                                                                             tACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTAc              <  1:3487957/91‑1 (MQ=255)

                                                                             tACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTAc              <  1:312990/91‑1 (MQ=255)

                                                                             tACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTAc              <  1:2777598/91‑1 (MQ=255)

                                                                              acggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACa             <  1:1239851‑M2/79‑1 (MQ=255)

                                                                                ggttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATc           <  2:700860‑M2/81‑1 (MQ=255)

                                                                                  ttctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGt         <  2:3484914‑M2/83‑1 (MQ=255)

                                                                                   tctttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGtt        <  2:1679806‑M2/84‑1 (MQ=255)

                                                                                     tttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTaa      <  1:1143259‑M2/86‑1 (MQ=255)

                                                                                     tttttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTaa      <  1:3377690‑M2/86‑1 (MQ=255)

                                                                                       tttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGcc                                                  >  2:556913‑M2/4‑45 (MQ=255)

                                                                                       tttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACg    >  1:549842‑M2/4‑91 (MQ=255)

                                                                                        ttTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGa   <  1:1324635‑M2/89‑1 (MQ=255)

TCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTACATCGTTAACGAA  >  USA300TCH1516_ALE/2541760‑2541939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.