| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2582348 | 153 (0.800) | 23 (0.130) | 10/144 | NT | 13.3% | intergenic (+23/+39) | pnbA/pbuE | Para‑nitrobenzyl esterase/Purine efflux pump PbuE |
| ? | USA300TCH1516_ALE | = 2582368 | 163 (0.950) | intergenic (+43/+19) | pnbA/pbuE | Para‑nitrobenzyl esterase/Purine efflux pump PbuE | |||||
AATTTTGCTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2582251‑2582348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcacGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACATCGGCC < USA300TCH1516_ALE/2582368‑2582279 AATTTTGCTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAA < 1:3155665/91‑1AATTTTGCTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAA < 1:2163065/91‑1 TGCTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGC > 1:70258/1‑91 TGCTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGC < 2:485756/91‑1 TGCTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGC > 1:2940753/1‑91 TGCTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGC > 1:2815062/1‑91 GCTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCA > 2:1937993/1‑91 GCTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCA < 2:1608629/91‑1 GCTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCA < 1:1576116/91‑1 GCTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCA > 1:1191027/1‑91 GCTAAAAACGGTAAAATGCCTTGGCCGATGTATCATCATGGACGTCGATATTATCGCACATATCAAGCACGTTATCGCATCTAAAAAAGCA > 2:3604816/1‑91 CTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCAC > 1:809416/1‑91 CTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCAC < 1:1011688/91‑1 AAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGC > 2:2159858/1‑91 AAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGC > 2:227030/1‑91 CGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCT < 2:2980477/91‑1 CGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCT < 2:2980461/91‑1 TGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGT < 2:255504/91‑1 TGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGT < 2:255520/91‑1 TGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGT < 2:255679/91‑1 GCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGT < 2:2799575/91‑1 GCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGT < 2:2937190/91‑1 CCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTG < 1:1369257/91‑1 CCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTG < 2:3656068/91‑1 CCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTG < 1:2724732/91‑1 cgagGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGGGTGC < 1:3059216/87‑1 CGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTGC < 2:3106095/91‑1 CGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTGC < 2:883157/91‑1 GATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTGCT < 1:385236/91‑1 GATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTGCT < 2:1341992/91‑1 GATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTGCT < 2:1287463/91‑1 GATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTGCT < 2:2535281/91‑1 ATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTGCTT < 1:1545463/91‑1 ATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTGCTT < 2:1691150/91‑1 TGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTGCTTT < 2:200912/91‑1 GTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTGCTTTT < 1:1263190/91‑1 CAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAA < 1:227030/91‑1 CAATAACGTTATCGCATCTAAAAAAGCACGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAA < 1:2159858/91‑1 AAAAGCACGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATAC > 2:2732256/1‑91 AAAAGCACGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATAC < 2:3539740/91‑1 AAGCACGCCTGCTATCAAATTCAGGTGTGTTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACAT > 2:3381736/1‑91 AAGCACGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACAT > 1:972038/1‑91 AAGCACGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACAT < 1:1524523/91‑1 AAGCACGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACAT > 2:1618114/1‑91 AGCACGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACATC < 2:437125/91‑1 GCACGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACATCG < 2:875115/91‑1 CACGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACATCGG < 1:1853711/91‑1 CACGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACATCGG < 1:1853660/91‑1 CACGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACATCGG > 1:599944/1‑91 CGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACATCGGCC > 2:24356/1‑91 CGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACATCGGCC > 2:1902711/1‑91 CGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACATCGGCC < 1:3836873/91‑1 CGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACATCGGCC > 2:2675290/1‑91 CGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACATCGGCC > 2:1848234/1‑91 AATTTTGCTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2582251‑2582348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcacGCCTGCTATCAAATTCAGGTGTGCTTTTTTAGATGCGATAACGTTATTGATATGTGCGATAATAGCGACGTTCATTATGATACATCGGCC < USA300TCH1516_ALE/2582368‑2582279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |