BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2582348	153 (0.800)	23 (0.130)	10/144	NT	13.3%	intergenic (+23/+39)	pnbA/pbuE	Para‑nitrobenzyl esterase/Purine efflux pump PbuE
*	?	USA300TCH1516_ALE	= 2582368	163 (0.950)	23 (0.130)	10/144	NT	13.3%	intergenic (+43/+19)	pnbA/pbuE	Para‑nitrobenzyl esterase/Purine efflux pump PbuE

Only 100 of 260 total aligned reads displayed.

CTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTCAATGTGAAAACA  >  USA300TCH1516_ALE/2582258‑2582438

  aaaaGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTCTCGCATCTAAAAAAGCacac                                                                                          >  2:3496048/1‑91 (MQ=255)

  aaaaGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACgc                                                                                          >  2:2159858‑M1/1‑89 (MQ=255)

   aaaGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACAcc                                                                                         <  1:3588400/91‑1 (MQ=255)

   aaaGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACAcc                                                                                         >  1:1905528/1‑91 (MQ=255)

   aaaGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACAcc                                                                                         >  1:2821135/1‑91 (MQ=255)

    aaGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCt                                                                                        <  2:2821135/91‑1 (MQ=255)

     aGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTg                                                                                       >  2:2457892/1‑91 (MQ=255)

      gCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGa                                                                                      <  1:172051/91‑1 (MQ=255)

       cGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACgcctgct                                                                                     <  2:2980461‑M1/91‑8 (MQ=255)

          tAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAAttt                                                                                  >  2:1242336/1‑91 (MQ=255)

             aaTGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGAt                                                                               <  1:1308115/91‑1 (MQ=255)

             aaTGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGAt                                                                               <  1:656803/91‑1 (MQ=255)

             aaTGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGAt                                                                               >  2:1354675/1‑91 (MQ=255)

              aTGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATa                                                                              <  1:547504/91‑1 (MQ=255)

              aTGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATa                                                                              <  1:1820044/91‑1 (MQ=255)

               tGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAg                                                                             <  2:1724879/91‑1 (MQ=255)

                 ccTTGGCCGATGTAGCATAGTGAACGTCGCTATTATCGCACATATCAGTAGCGTTAGCGCATCTAAAAAAGCACACCTGAATTTGATAGCa                                                                           <  2:555097/91‑1 (MQ=255)

                  cTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAg                                                                          >  1:3348088/1‑91 (MQ=255)

                   ttGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAgg                                                                         <  2:574784/91‑1 (MQ=255)

                   ttGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAgg                                                                         >  1:2218614/1‑91 (MQ=255)

                   ttGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAgg                                                                         <  2:3243737/91‑1 (MQ=255)

                   ttGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAga                                                                         >  2:3852157/1‑90 (MQ=255)

                    tGGCCTATGTATCATAATGAACGTCTCTATTATCGCACATATCAATAACGTTAACGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGc                                                                        <  1:3604816/91‑1 (MQ=255)

                    tGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACgcctgctatcaaattcaggt                                                                        <  2:255520‑M1/91‑21 (MQ=255)

                    tGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGc                                                                        <  1:321779/91‑1 (MQ=255)

                    tGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGc                                                                        <  1:33249/91‑1 (MQ=255)

                     ggCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCg                                                                       >  2:1848234‑M2/1‑90 (MQ=255)

                      gCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACgcctgctatcaaattcaggtgt                                                                      <  2:2799575‑M1/91‑23 (MQ=255)

                      gCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACgcctgctatcaaattcaggtgt                                                                      <  2:2937190‑M1/91‑23 (MQ=255)

                       ccGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCgtg                                                                     <  1:1853660‑M2/91‑4 (MQ=255)

                        cGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCgtgc                                                                    <  2:875115‑M2/91‑5 (MQ=255)

                         gATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACgcctgctatcaaattcaggtgtgct                                                                   <  1:385236‑M1/91‑26 (MQ=255)

                          aTGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACgcctgctatcaaattcaggtgtgctt                                                                  <  1:1545463‑M1/91‑27 (MQ=255)

                          aTGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACgcctgctatcaaattcaggtgtgctt                                                                  <  2:1691150‑M1/91‑27 (MQ=255)

                            gTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACgcctgctatcaaattcaggtgtgctttt                                                                <  1:1263190‑M1/91‑29 (MQ=255)

                            gTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCgtgctttt                                                                <  2:3539740‑M2/91‑9 (MQ=255)

                                cATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCata                                                            <  1:3857429/91‑1 (MQ=255)

                                cATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCata                                                            <  1:1291027/91‑1 (MQ=255)

                                 aTAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCatat                                                           >  1:2083303/1‑91 (MQ=255)

                                  tAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATg                                                          <  1:96379/91‑1 (MQ=255)

                                   aaTGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATga                                                         <  1:2886417/91‑1 (MQ=255)

                                       aaCGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAAt                                                     <  1:1073422/91‑1 (MQ=255)

                                        aCGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAAtt                                                    <  2:3080362/91‑1 (MQ=255)

                                        aCGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAAtt                                                    >  2:826747/1‑91 (MQ=255)

                                         cGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTa                                                   <  2:1561326/91‑1 (MQ=255)

                                          gTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTat                                                  <  2:2431520/91‑1 (MQ=255)

                                           tCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGTTTTTCATATGAGAATTatg                                                 >  1:809495/1‑91 (MQ=255)

                                            cGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTatgt                                                >  1:403960/1‑90 (MQ=255)

                                             gCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTatgat                                               >  1:3818019/1‑91 (MQ=255)

                                             gCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTatgat                                               >  1:3788436/1‑91 (MQ=255)

                                             gCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTatgat                                               <  2:2178889/91‑1 (MQ=255)

                                             gCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTatgat                                               <  2:1384110/91‑1 (MQ=255)

                                               tattatCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTAtgatga                                             >  1:2708051/1‑91 (MQ=255)

                                                attatCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATgatgat                                            <  2:641368/91‑1 (MQ=255)

                                                 ttatCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCgtgcttttttagatgcgataacgttattg                                           <  1:227030‑M2/91‑30 (MQ=255)

                                                     cGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTaaa                                       >  2:3118007/1‑91 (MQ=255)

                                                            atCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTa                                >  2:2236956/1‑91 (MQ=255)

                                                             tCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAg                               <  2:3738991/91‑1 (MQ=255)

                                                              cAATAACGTTATCGCATCTAAAAAAGCACgcctgctatcaaattcaggtgtgcttttttagatgcgataacgttattgatatgtgcgataa                              <  1:2159858‑M1/91‑63 (MQ=255)

                                                               aaTAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCa                             >  2:3184380/1‑91 (MQ=255)

                                                                aTAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCAt                            >  1:3535802/1‑91 (MQ=255)

                                                                aTAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCAt                            >  2:737487/1‑91 (MQ=255)

                                                                   aCGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAAt                         >  2:2303204/1‑91 (MQ=255)

                                                                    cGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATg                        <  1:1023561/91‑1 (MQ=255)

                                                                    cGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATg                        <  1:1432053/91‑1 (MQ=255)

                                                                     gTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATaa                          <  1:15858/88‑1 (MQ=255)

                                                                     gTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGa                       >  2:1927433/1‑91 (MQ=255)

                                                                      ttATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGat                      <  1:2520818/91‑1 (MQ=255)

                                                                      ttATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGat                      >  2:2401193/1‑91 (MQ=255)

                                                                      ttATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGat                      >  2:2940594/1‑91 (MQ=255)

                                                                        aTCGCATCTAAAAAAGCACACCTGACATTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGatta                    <  2:3367878/91‑1 (MQ=255)

                                                                        aTCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGatta                    <  2:1548252/91‑1 (MQ=255)

                                                                        aTCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGatta                    >  1:1209780/1‑91 (MQ=255)

                                                                        aTCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGatta                    >  2:2638233/1‑91 (MQ=255)

                                                                           gCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTAttt                 >  2:3014188/1‑91 (MQ=255)

                                                                            cATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTAtttt                >  1:492177/1‑91 (MQ=255)

                                                                             aTCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTAttttt               <  1:3160100/91‑1 (MQ=255)

                                                                              tCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTc              <  2:3274536/91‑1 (MQ=255)

                                                                               cTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTCa             >  2:378786/1‑91 (MQ=255)

                                                                                 aaaaaaGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTCAAt           >  1:920453/1‑91 (MQ=255)

                                                                                  aaaaaGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTCAAtg          >  1:3028315/1‑91 (MQ=255)

                                                                                   aaaaGCACgcctgctatcaaattcaggtgtgcttttttagatgcgataacgttattgatatgtgcgataatagcgacgttcattatgatac         >  2:2732256‑M1/1‑8 (MQ=255)

                                                                                   aaaaGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTCAAtgt         <  2:1086996/91‑1 (MQ=255)

                                                                                   aaaaGCACACCTGAATTTGATAGCAGGCGAGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTCAAtgt         <  1:3107258/91‑1 (MQ=255)

                                                                                    aaaGCACACCTGAATTTGATAGCAGGCgtgcttttttagatgcgataacgttattgatatgtgcgataatagcgacgttcattatgataca        <  2:200912‑M2/91‑65 (MQ=255)

                                                                                     aaGCACgcctgctatcaaattcaggtgtgcttttttagatgcgataacgttattgatatgtgcgataatagcgacgttcattatgatacat       >  2:1618114‑M1/1‑6 (MQ=255)

                                                                                     aaGCACgcctgctatcaaattcaggtgtgcttttttagatgcgataacgttattgatatgtgcgataatagcgacgttcattatgatacat       >  1:972038‑M1/1‑6 (MQ=255)

                                                                                      aGCACgcctgctatcaaattcaggtgtgcttttttagatgcgataacgttattgatatgtgcgataatagcgacgttcattatgatacatc      <  2:437125‑M1/91‑87 (MQ=255)

                                                                                      aGCACACCTGAATTTGATAGCAGGCgtgcttttttagatgcgataacgttattgatatgtgcgataatagcgacgttcattatgatacatc      <  2:1287463‑M2/91‑67 (MQ=255)

                                                                                      aGCACACCTGAATTTGATAGCAGGCgtgcttttttagatgcgataacgttattgatatgtgcgataatagcgacgttcattatgatacatc      <  2:2535281‑M2/91‑67 (MQ=255)

                                                                                      aGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTCAATGTGaa      <  1:2303204/91‑1 (MQ=255)

                                                                                      aGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTCAATGTGaa      >  1:3676241/1‑91 (MQ=255)

                                                                                        cacaCCTGAATTTGATAGCAGGCgtgcttttttagatgcgataacgttattgatatgtgcgataatagcgacgttcattatgatacatcgg    <  2:3656068‑M2/91‑69 (MQ=255)

                                                                                        cacaCCTGAATTTGATAGCAGGCgtgcttttttagatgcgataacgttattgatatgtgcgataatagcgacgttcattatgatacatcgg    <  1:1369257‑M2/91‑69 (MQ=255)

                                                                                        cACgcctgctatcaaattcaggtgtgcttttttagatgcgataacgttattgatatgtgcgataatagcgacgttcattatgatacatcgg    >  1:599944‑M1/1‑3 (MQ=255)

                                                                                          cgcctgctatcaaattcaggtgtgcttttttagatgcgataacgttattgatatgtgcgataatagcgacgttcattatgatacatcggcc  >  2:1902711‑M1/1‑1 (MQ=255)

                                                                                          cgcctgctatcaaattcaggtgtgcttttttagatgcgataacgttattgatatgtgcgataatagcgacgttcattatgatacatcggcc  <  1:3836873‑M1/91‑91 (MQ=255)

                                                                                          cacCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTCAATGTGAAaaca  <  1:1010293/91‑1 (MQ=255)

                                                                                          cacCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTCAATGTGAAaaca  >  1:682468/1‑91 (MQ=255)

                                                                                          cacCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTCAATGTGAAaaca  >  2:2570145/1‑91 (MQ=255)

CTAAAAGCGGTAAAATGCCTTGGCCGATGTATCATAATGAACGTCGCTATTATCGCACATATCAATAACGTTATCGCATCTAAAAAAGCACACCTGAATTTGATAGCAGGCGTGCTTTTCATATGAGAATTATGATGATTTAAATGTTTTAGCATAATGATTATTTTTCAATGTGAAAACA  >  USA300TCH1516_ALE/2582258‑2582438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.