| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2646130 = | 219 (1.150) | 12 (0.070) | 8/152 | NT | 5.4% | coding (158/1278 nt) | sauU | putative sulfoacetate transporter SauU |
| ? | USA300TCH1516_ALE | 2646163 = | 209 (1.160) | coding (125/1278 nt) | sauU | putative sulfoacetate transporter SauU | |||||
TTGCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2646223‑2646130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGCGCG > USA300TCH1516_ALE/2646163‑2646252 TTGCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGC < 1:1387987/91‑1TTGCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGC < 1:1546252/91‑1TTGCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGC < 2:3450497/91‑1TTGCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGC > 2:3374179/1‑91TTGCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGC < 1:2035319/91‑1TTGCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGC < 1:3351146/91‑1 TGCGTATATGGATCGAGCAAACATTTCATATATCGCTAAGCAAGTGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCA < 1:3883554/91‑1 TGCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCA < 1:2427628/91‑1 GCGTATATGGATAGAGCAAACATTTCGTATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCAT < 2:1617809/91‑1 GCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCAT < 1:1407811/91‑1 GCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCAT > 2:885602/1‑91 GCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCAT < 2:3753063/91‑1 GCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCAT < 2:2746979/91‑1 GCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCAT > 1:884564/1‑91 GCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCAT > 1:2598623/1‑91 CGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCATC > 1:2974577/1‑91 CGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCATC > 2:3558475/1‑91 CGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCATC > 2:2320959/1‑91 AGGGATGACAAAACCACAATTTGGTTTATTGGCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATAT > 1:626370/1‑91 GGGATGACAAAACCACAATTTGGTTTATTGGCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATA > 1:1638901/1‑91 GGATGACAAAACCACAATTTGGTTTATTGGCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATAC > 2:2887988/1‑91 GATGACAAAACCACAATTTGGTTTTTTGGCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACG > 2:2151963/1‑91 GATGACAAAACCACAATTTGGTTTATTGGCATCCCCAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACG > 2:2485462/1‑91 GATGACAAAACCACAATTTGGTTTATTGGCATCCCCAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACG > 2:2484519/1‑91 GACAAAACCACAATTTGGTTTATTGGCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAA > 1:249377/1‑91 AAAACCACAATTTGGTT‑‑TTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACC > 1:1541091/1‑91 AAACCACAATTTGGTTTATTGGCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAAC > 1:2589946/1‑91 AACCACAATTTGGTTTATTGGCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACC > 1:268731/1‑91 ACCACAATTTGGTTTATTGGCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCC > 1:2384162/1‑91 ACCACAATTTGGTTTATTGGCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCC > 2:905524/1‑91 ATTGGCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACG > 1:1601688/1‑91 ATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGCG < 2:1944520/91‑1 ATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGCG < 1:1595152/91‑1 TCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGCGC > 1:2471486/1‑91 CCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGCGCG < 2:2222320/91‑1 CCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGCGCG < 1:1662594/91‑1 CCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGCGCG < 1:1871618/91‑1 TTGCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGATTTAGGGATGACAAAACCACAATTTGGTTTATTGGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2646223‑2646130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGCGCG > USA300TCH1516_ALE/2646163‑2646252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |