BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2646130 =	219 (1.150)	12 (0.070)	8/152	NT	5.4%	coding (158/1278 nt)	sauU	putative sulfoacetate transporter SauU
*	?	USA300TCH1516_ALE	2646163 =	209 (1.160)	12 (0.070)	8/152	NT	5.4%	coding (125/1278 nt)	sauU	putative sulfoacetate transporter SauU

Only 100 of 275 total aligned reads displayed.

TTTTCAGCCAACATCCCCGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGCGCGA  >  USA300TCH1516_ALE/2646073‑2646253

  ttCAGCCAACATCCCCGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCt                                                                                          >  1:229592/1‑91 (MQ=255)

  ttCAGCCAACATCCCCGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCt                                                                                          <  2:1751297/91‑1 (MQ=255)

   tCAGCCAACATCCCCGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCGAATTGTGGTTTTGTCATCCCTa                                                                                         <  2:18755/91‑1 (MQ=255)

      gCCAACATCCCCGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAat                                                                                      >  2:2384408/1‑91 (MQ=255)

      gCCAACATCCCCGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAat                                                                                      >  2:3576245/1‑91 (MQ=255)

        cAACATCCCCGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAatca                                                                                    <  1:1334208/91‑1 (MQ=255)

              ccccGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATcatccatc                                                                              >  2:668972/1‑91 (MQ=255)

              ccccGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATcatccatc                                                                              >  2:63353/1‑91 (MQ=255)

              ccccGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATcatccatc                                                                              >  2:485398/1‑91 (MQ=255)

              ccccGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATcatccatc                                                                              <  2:1477424/91‑1 (MQ=255)

               cccGATGGTACTTGCATTAATGCATAACCTAGATAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCcatca                                                                             <  2:591933/91‑1 (MQ=255)

               cccGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCcatca                                                                             >  1:1622611/1‑91 (MQ=255)

               cccGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCcatca                                                                             >  2:230811/1‑91 (MQ=255)

               cccGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCcatca                                                                             >  2:2017275/1‑91 (MQ=255)

                  gATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAGACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCAttt                                                                          >  2:3417852/1‑91 (MQ=255)

                  gATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCAttt                                                                          >  2:354632/1‑91 (MQ=255)

                   aTGGTGCTTGCATTAATGCATAACCGAGAGAGAAGAATGGTGCCAATAAACCATATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTg                                                                         <  1:3603453/91‑1 (MQ=255)

                    tGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGc                                                                        >  1:43666/1‑91 (MQ=255)

                       tACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCCATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTa                                                                     >  2:1240801/1‑91 (MQ=255)

                        aCTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAg                                                                    >  1:3552390/1‑91 (MQ=255)

                          ttGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCg                                                                  >  1:1842162/1‑91 (MQ=255)

                           tGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGa                                                                 >  1:1056501/1‑91 (MQ=255)

                              aTTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGatat                                                              <  1:2900979/91‑1 (MQ=255)

                                tAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGatatat                                                            <  1:1636685/91‑1 (MQ=255)

                                 aaTGCATAACCTAGAGGGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATg                                                           <  2:3707049/91‑1 (MQ=255)

                                 aaTGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGCTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATg                                                           <  1:2763586/91‑1 (MQ=255)

                                  aTGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGa                                                          <  1:459290/91‑1 (MQ=255)

                                  aTGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGa                                                          >  2:2061014/1‑91 (MQ=255)

                                   tGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGaa                                                         >  1:3471746/1‑91 (MQ=255)

                                   tGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGaa                                                         <  2:1608389/91‑1 (MQ=255)

                                    gCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGaaa                                                        >  2:2426421/1‑91 (MQ=255)

                                      aTAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATg                                                      >  2:1890000/1‑91 (MQ=255)

                                      aTAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATg                                                      >  1:3236240/1‑91 (MQ=255)

                                        aaCCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGtt                                                    <  2:1064500/91‑1 (MQ=255)

                                        aaCCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGtt                                                    <  2:1443399/91‑1 (MQ=255)

                                         aCCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGttt                                                   >  2:2881776/1‑91 (MQ=255)

                                          ccTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTg                                                  <  1:851661/91‑1 (MQ=255)

                                           cTAGGGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGc                                                 <  2:3736897/91‑1 (MQ=255)

                                            tAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGct                                                >  1:1808288/1‑91 (MQ=255)

                                            tAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGct                                                <  2:2710693/91‑1 (MQ=255)

                                             agagagAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGctc                                               <  1:675513/91‑1 (MQ=255)

                                              gagagaAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCTTCATTTGCTTAGCGATATATGAAATGTTTGctct                                              >  2:1394751/1‑91 (MQ=255)

                                              gagagaAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGctct                                              >  2:1165894/1‑91 (MQ=255)

                                               agagaAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTa                                             >  1:2341694/1‑91 (MQ=255)

                                                 ggaagaaGGATGCCAATAAACCAATTTGTGGTTTTGTCGTCCCTAATTCACCCATCATTGGCTTAGCGATATATGAAATGTTTGCTCTATc                                           <  2:1576737/90‑1 (MQ=255)

                                                 agaagaATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATc                                           >  2:3621527/1‑91 (MQ=255)

                                                  gaagaaTGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATcc                                          >  2:2909429/1‑91 (MQ=255)

                                                  gaagaaTAATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATcc                                          <  1:1941881/91‑1 (MQ=255)

                                                    agaaTGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCat                                        >  2:3066044/1‑91 (MQ=255)

                                                    agaaTGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCat                                        <  1:1063648/91‑1 (MQ=255)

                                                      agggatgacaaaaccacaatttggtttattggcatcCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCatat                                      >  1:626370‑M2/37‑91 (MQ=255)

                                                      aaTGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCatat                                      <  2:73684/91‑1 (MQ=255)

                                                      aaTGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCatat                                      >  2:1595152/1‑91 (MQ=255)

                                                      aaTGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCatat                                      >  2:1690725/1‑91 (MQ=255)

                                                       gggatgacaaaaccacaatttggtttattggcatcCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCAtata                                     >  1:1638901‑M2/36‑91 (MQ=255)

                                                        tgatgCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATACATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATAc                                    >  1:1268193/1‑91 (MQ=255)

                                                        ggatgacaaaaccacaatttggtttattggcatcCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATAc                                    >  2:2887988‑M2/35‑91 (MQ=255)

                                                         gatgacaaaaccacaatttggtttattggcatcCCCAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACg                                   >  2:2485462‑M2/34‑91 (MQ=255)

                                                         GATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACg                                   >  1:2974577‑M1/1‑91 (MQ=255)

                                                          ATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGc                                  >  2:885602‑M1/1‑91 (MQ=255)

                                                          ATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGc                                  <  2:2746979‑M1/91‑1 (MQ=255)

                                                          ATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGc                                  >  1:2598623‑M1/1‑91 (MQ=255)

                                                           TGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCa                                 <  1:2427628‑M1/91‑1 (MQ=255)

                                                           TGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCACTTGCTTAGCGATATATGAAATGTTTGCTCGATCCATATACGCa                                 <  1:3883554‑M1/91‑1 (MQ=255)

                                                            gacaaaaccacaatttggtttattggcatcCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCaa                                >  1:249377‑M2/31‑91 (MQ=255)

                                                            GCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCaa                                <  1:1387987‑M1/91‑1 (MQ=255)

                                                            GCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCaa                                <  1:1546252‑M1/91‑1 (MQ=255)

                                                            GCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCaa                                >  2:3374179‑M1/1‑91 (MQ=255)

                                                            GCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCaa                                <  1:3351146‑M1/91‑1 (MQ=255)

                                                            GCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCaa                                <  1:2035319‑M1/91‑1 (MQ=255)

                                                              cAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATa                              >  2:447748/1‑91 (MQ=255)

                                                              cAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATa                              >  2:3262650/1‑91 (MQ=255)

                                                               aaTAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATaa                             >  1:937612/1‑91 (MQ=255)

                                                                 tAACCCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAAcc                           <  1:3123567/91‑1 (MQ=255)

                                                                 tAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAAcc                           <  2:2194048/91‑1 (MQ=255)

                                                                 aaccacaatttggtttattggcatcCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAAcc                           >  1:268731‑M2/26‑91 (MQ=255)

                                                                   aaCCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAAcccc                         <  1:3776156/91‑1 (MQ=255)

                                                                   aaCCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAAcccc                         >  1:945095/1‑91 (MQ=255)

                                                                     ccAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCaa                       >  1:2214035/1‑91 (MQ=255)

                                                                     ccAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCaa                       <  1:2389672/91‑1 (MQ=255)

                                                                     ccAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCaa                       >  2:3858027/1‑91 (MQ=255)

                                                                      cAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGCAATGTTTGCTCTATCCATATACGCAATAACCCCAAt                      >  2:3784943/1‑91 (MQ=255)

                                                                       aaaTTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATAGGCAATAACCCCAATa                     <  1:1254819/91‑1 (MQ=255)

                                                                       aaaTTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATa                     >  1:1787803/1‑91 (MQ=255)

                                                                        aaTTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATaa                    >  1:3739290/1‑91 (MQ=255)

                                                                        aaTTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATaa                    >  2:839324/1‑91 (MQ=255)

                                                                        aaTTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATaa                    >  1:729011/1‑91 (MQ=255)

                                                                        aaTTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATaa                    <  2:3769280/91‑1 (MQ=255)

                                                                           tgtgGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAaaga                 <  1:1497865/91‑1 (MQ=255)

                                                                           tgtgGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAaaga                 <  1:1177346/91‑1 (MQ=255)

                                                                           tgtgGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTCCTCTATCCATATAc                                    >  1:3184703/1‑72 (MQ=255)

                                                                              ggTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAagaaga              >  1:2142692/1‑91 (MQ=255)

                                                                              ggTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAagaaga              >  2:3175037/1‑91 (MQ=255)

                                                                                 tttGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACg           <  2:724695/91‑1 (MQ=255)

                                                                                  ttGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGc          <  1:1417843/91‑1 (MQ=255)

                                                                                  ttGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGc          <  2:3477385/91‑1 (MQ=255)

                                                                                       atcCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAgcg     <  2:1944520‑M2/88‑1 (MQ=255)

                                                                                         cCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGcgcg   <  1:1662594‑M2/90‑1 (MQ=255)

                                                                                         cCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGcgcg   <  2:2222320‑M2/90‑1 (MQ=255)

                                                                                          ccTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGCGCGa  >  1:1293915/1‑91 (MQ=255)

TTTTCAGCCAACATCCCCGATGGTACTTGCATTAATGCATAACCTAGAGAGAAGAATGATGCCAATAAACCAAATTGTGGTTTTGTCATCCCTAAATCATCCATCATTTGCTTAGCGATATATGAAATGTTTGCTCTATCCATATACGCAATAACCCCAATAAAGAAGAACGCAAGCGCGA  >  USA300TCH1516_ALE/2646073‑2646253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.