| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2651125 | 169 (0.890) | 16 (0.090) | 10/146 | NT | 9.0% | intergenic (+68/‑305) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 |
| ? | USA300TCH1516_ALE | = 2651145 | 170 (0.980) | intergenic (+88/‑285) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 | |||||
TATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2651029‑2651125‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcccCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACTA < USA300TCH1516_ALE/2651145‑2651055 TATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCA > 1:396259/1‑91TATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCA > 1:396044/1‑91TATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCA < 1:2705761/91‑1 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA < 1:793114/91‑1 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA < 1:793142/91‑1 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA > 2:1202288/1‑91 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA < 1:316137/91‑1 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA > 1:2881166/1‑91 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA < 2:3778604/91‑1 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA > 1:1658663/1‑91 TTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAA < 1:2545738/91‑1 TTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAA < 1:1119964/91‑1 TTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAAT > 2:1428084/1‑91 TTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAAT > 2:1272627/1‑91 TATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATC > 1:900517/1‑91 TATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATC > 1:497761/1‑91 TATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATC > 1:2181028/1‑91 ATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCC > 1:852184/1‑91 ATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCC > 1:2782568/1‑91 TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC < 2:2564387/91‑1 TTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTG < 2:1398524/91‑1 TAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAA < 1:2560903/91‑1 AGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAG < 2:2679381/91‑1 GTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGG < 2:3624773/91‑1 TAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGG < 1:1730937/91‑1 TAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGG < 2:3160286/91‑1 AACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGA < 2:1348300/91‑1 AACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGA < 2:1348185/91‑1 TTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATTT < 1:1422831/91‑1 TAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATTTG < 1:953434/91‑1 TAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATTTG < 2:3271507/91‑1 TAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATGCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATTTG < 2:1610631/91‑1 AAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATTTGA < 1:845337/91‑1 AAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATTTGA < 1:845349/91‑1 AAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATTTGA < 1:989601/91‑1 TATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAAT < 1:699210/91‑1 AAATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAA > 2:1649299/1‑91 ATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGT < 1:758571/91‑1 ATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGT < 1:758395/91‑1 ATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGT > 2:1674750/1‑91 ATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGT < 1:33906/91‑1 ATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGT < 1:758584/91‑1 TCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTT > 1:2277892/1‑91 TCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTT > 1:1515289/1‑91 TCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTT > 1:1515063/1‑91 CCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTA < 1:3811687/91‑1 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC < 1:201869/91‑1 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC < 2:14755/91‑1 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC > 2:2607728/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC > 1:643848/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC > 2:1139518/1‑91 CCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT > 1:213134/1‑91 CCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT > 1:2442156/1‑91 CCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT > 2:3742238/1‑91 CCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT < 2:3788510/91‑1 CCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT < 2:49429/91‑1 CCGCACCATTATTTGGGTGAAGGGA‑TTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACTA > 1:2442182/1‑91 TATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2651029‑2651125‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcccCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACTA < USA300TCH1516_ALE/2651145‑2651055 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |