| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2651125 | 169 (0.890) | 16 (0.090) | 10/146 | NT | 9.0% | intergenic (+68/‑305) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 |
| ? | USA300TCH1516_ALE | = 2651145 | 170 (0.980) | intergenic (+88/‑285) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 | |||||
Only 100 of 275 total aligned reads displayed.
TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAT > USA300TCH1516_ALE/2651035‑2651215 | ttCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCtt > 1:1822946/1‑91 (MQ=255) tCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTc > 1:3138994/1‑91 (MQ=255) tCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTc > 1:1734062/1‑91 (MQ=255) cAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCa > 2:685662/1‑91 (MQ=255) agaagaAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAcc > 1:3284817/1‑91 (MQ=255) agaagaAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAcc < 1:242165/91‑1 (MQ=255) agaagaAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAcc > 1:1724980/1‑91 (MQ=255) gaagaaAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAccc > 1:3579401/1‑91 (MQ=255) aagaaAACTATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCa < 1:1932393/91‑1 (MQ=255) aaaaTATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAaata < 2:1644494/91‑1 (MQ=255) aaaaTATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACAGATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAaata < 1:3072025/91‑1 (MQ=255) aaaTATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAaataa > 2:1377013/1‑91 (MQ=255) aaTATTTAGTAACTTCAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCACAATCATTTTCAAATCCCTTCACCCAaataat > 1:1255859/1‑91 (MQ=255) atTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGt > 1:1034974/1‑91 (MQ=255) ttAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGc > 1:3883332/1‑91 (MQ=255) ttAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGc > 2:2467703/1‑91 (MQ=255) tAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCg > 1:585196/1‑91 (MQ=255) aGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgcaccattatttgggtgaag < 2:2679381‑M1/91‑22 (MQ=255) aGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGg > 1:213134‑M2/1‑90 (MQ=255) aGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGg < 2:49429‑M2/91‑2 (MQ=255) gTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgcaccattatttgggtgaagg < 2:3624773‑M1/91‑23 (MQ=255) gTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgg < 1:201869‑M2/91‑3 (MQ=255) tAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGggg < 1:3811687‑M2/91‑4 (MQ=255) cactagtttcctaaaaaattatgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAAATAATGGTGCGGGGa > 1:284721‑M1/61‑91 (MQ=255) cactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAAATAATGGTGCGGGGa > 2:1112959‑M1/61‑91 (MQ=255) aaCTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGggga > 1:2277892‑M2/1‑87 (MQ=255) aCTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgggat < 1:758395‑M2/91‑6 (MQ=255) ttAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgggattt > 2:1649299‑M2/1‑84 (MQ=255) tAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgcaccattatttgggtgaagggatttg < 2:3271507‑M1/91‑29 (MQ=255) aaaGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgcaccattatttgggtgaagggatttga < 1:845337‑M1/91‑30 (MQ=255) aaaGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGAttttt < 1:3633848/91‑1 (MQ=255) aGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTc < 1:419830/91‑1 (MQ=255) gTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCa > 2:2679523/1‑91 (MQ=255) tATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCAt < 2:31439/91‑1 (MQ=255) aTTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATc < 1:3062224/91‑1 (MQ=255) aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCaaa > 1:1592160/1‑91 (MQ=255) aTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAt > 2:1938615/1‑91 (MQ=255) gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAttt > 1:1282427/1‑91 (MQ=255) gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAttt > 1:1617954/1‑91 (MQ=255) gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAttt > 1:8927/1‑91 (MQ=255) tAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCTAATAATGGTGCGGGGATTTTTTCATCCAAATTTTgg > 2:3055343/1‑91 (MQ=255) tAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTgg > 1:2943827/1‑91 (MQ=255) tACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAAt > 2:544406/1‑91 (MQ=255) tACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAAt < 1:399472/91‑1 (MQ=255) cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCCAATTTTGGAAATTc < 2:3299193/91‑1 (MQ=255) acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc > 1:1143274/1‑91 (MQ=255) acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc < 1:1754492/91‑1 (MQ=255) acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc > 2:3358046/1‑91 (MQ=255) acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc > 1:2200197/1‑91 (MQ=255) acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc > 1:2044688/1‑91 (MQ=255) caTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCcaca > 2:1726237/1‑91 (MQ=255) atatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAt > 1:896963/1‑91 (MQ=255) tatTCCATTGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtt < 2:2137924/91‑1 (MQ=255) tatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtt > 2:2137145/1‑91 (MQ=255) tatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTCTTCATCCAAATTTTGGAACTTCCACAtt > 2:2367326/1‑91 (MQ=255) ttCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtttt > 1:3266992/1‑91 (MQ=255) ttCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtttt > 2:1586658/1‑91 (MQ=255) tCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAACTAATGGTGCGGGGATTTTTTCATCCAGATTTTGGAAATTCCACATTTTa > 2:2943503/1‑91 (MQ=255) ccATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTAc > 1:1384072/1‑91 (MQ=255) attgTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat > 1:899133/4‑91 (MQ=255) aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat > 2:59913/1‑91 (MQ=255) aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTTATCCAAATTTTGGCAATTCCACATTTTACATATCGt < 1:2779778/91‑1 (MQ=255) aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt > 1:1093116/1‑91 (MQ=255) aTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTa < 1:146660/91‑1 (MQ=255) cAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATCTCGTAAtt > 2:17619/1‑91 (MQ=255) aaaaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAttt > 1:3174366/1‑91 (MQ=255) aaaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtttt < 1:3542012/91‑1 (MQ=255) aaaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtttt < 1:2683386/91‑1 (MQ=255) cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg < 1:2384509/91‑1 (MQ=255) cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg > 2:2045292/1‑91 (MQ=255) cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg < 2:182335/91‑1 (MQ=255) cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg < 1:2384828/91‑1 (MQ=255) cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg < 2:3769487/91‑1 (MQ=255) aTTTTCAAATCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaata < 1:699210‑M2/91‑59 (MQ=255) aTTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAgg < 2:3160603/91‑1 (MQ=255) aTTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAgg > 2:1418804/1‑91 (MQ=255) aTTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAgg < 2:380553/91‑1 (MQ=255) tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa < 1:670970/91‑1 (MQ=255) ttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaaa > 1:3416191/1‑91 (MQ=255) ttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaaa > 1:1704906/1‑91 (MQ=255) ttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaaa < 1:2014226/91‑1 (MQ=255) tCAAATCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatacttt < 1:989601‑M2/91‑63 (MQ=255) tCAAATCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatacttt < 1:845349‑M2/91‑63 (MQ=255) cAAATCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgcattacgatggaatatgtgtgtatttagacatttaatacttta < 2:1610631‑M2/91‑64 (MQ=255) cAAATCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatacttta < 1:953434‑M2/91‑64 (MQ=255) cAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTAGACATATCGTAATTTTTTAGGAAACt > 2:3360420/1‑91 (MQ=255) AATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAg < 1:1006981‑M1/91‑1 (MQ=255) aTCCCcgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagt < 1:33906‑M1/91‑87 (MQ=255) aTCCCcgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagt < 1:758584‑M1/91‑87 (MQ=255) tCCCcgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagtt > 1:1515063‑M1/1‑4 (MQ=255) tCCCcgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagtt > 1:1515289‑M1/1‑4 (MQ=255) tCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagtt < 2:1348185‑M2/91‑68 (MQ=255) cccgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttac > 2:2607728‑M1/1‑2 (MQ=255) cccgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttac > 1:643848‑M1/1‑2 (MQ=255) cccgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttac < 2:14755‑M1/91‑90 (MQ=255) cccgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttac > 2:1139518‑M1/1‑2 (MQ=255) ccgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttact > 2:3742238‑M1/1‑1 (MQ=255) ccgcaccattatttgggtgaagggattgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttacta > 1:2442182‑M1/1‑1 (MQ=255) CTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAt < 2:429154‑M1/91‑1 (MQ=255) CTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAt > 2:11849‑M1/1‑91 (MQ=255) | TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAT > USA300TCH1516_ALE/2651035‑2651215 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |