| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2674533 = | 202 (1.060) | 17 (0.100) | 8/140 | NT | 10.0% | intergenic (‑45/+256) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP |
| ? | USA300TCH1516_ALE | 2674588 = | 131 (0.790) | intergenic (‑100/+201) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP | |||||
GTATAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2674632‑2674533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT > USA300TCH1516_ALE/2674588‑2674677 GTATAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTT < 2:872349/91‑1 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT > 1:1103161/1‑91 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT > 1:1281868/1‑91 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT > 1:953575/1‑91 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT < 1:3436501/91‑1 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT > 1:2271930/1‑91 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT < 1:3436404/91‑1 ATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC < 2:3535196/91‑1 ATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC > 1:934874/1‑91 ATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC < 2:1107776/91‑1 ATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC < 1:3630661/91‑1 ATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC < 2:1986994/91‑1 ATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC < 2:1986882/91‑1 gcGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCC > 1:2135156/3‑91 TAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCC < 2:1481542/91‑1 TAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCC < 1:715328/91‑1 TAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCC < 1:1270103/91‑1 TAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCC < 2:894832/91‑1 GCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTG < 1:3439699/91‑1 GCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTG > 1:3627452/1‑91 CTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC > 1:2283885/1‑91 CTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC > 2:2748935/1‑91 TTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC > 1:212412/1‑80 TTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC < 2:212412/80‑1 GAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATA > 1:804960/1‑91 AGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATAC > 2:2967665/1‑91 GCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACA > 1:3176429/1‑91 CAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACAT > 2:1392226/1‑91 CAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACAT > 2:1392217/1‑91 AAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATA > 1:802639/1‑91 AAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATA > 2:3137148/1‑91 AAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATA > 1:9247/1‑91 AAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATA > 1:1121873/1‑91 AAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATA > 1:1121944/1‑91 AAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATA > 1:3750640/1‑91 AAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATA > 1:3750251/1‑91 AAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATA > 1:2308709/1‑91 AACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATAT > 2:37796/1‑91 CAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTT > 2:1161635/1‑91 TGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTT < 2:1121873/91‑1 TGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTT < 2:1121944/91‑1 TCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAA > 1:3470076/1‑91 TCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAA < 2:1445152/91‑1 CATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAAT > 1:2728571/1‑91 CATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAAT > 1:1320688/1‑91 CATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAAT > 1:1320748/1‑91 TGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTT < 2:1709193/91‑1 TGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTT < 1:2081965/91‑1 TGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTT > 1:268146/1‑91 TGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTT > 1:3600936/1‑91 TGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTT < 1:2082307/91‑1 TGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTT < 1:2082009/91‑1 CCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTA < 1:827782/91‑1 CCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTA < 1:3635553/91‑1 CCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTA < 1:51125/91‑1 TGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATC < 2:3108574/91‑1 TGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATC < 2:3108576/91‑1 TGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATC < 2:3108657/91‑1 GCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCA < 2:2573338/91‑1 GCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCA < 2:154066/91‑1 GCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCA < 1:610174/91‑1 CATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT > 2:1968962/1‑91 CATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT < 2:1802632/91‑1 GTATAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2674632‑2674533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT > USA300TCH1516_ALE/2674588‑2674677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |