| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2674533 = | 202 (1.060) | 17 (0.100) | 8/140 | NT | 10.0% | intergenic (‑45/+256) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP |
| ? | USA300TCH1516_ALE | 2674588 = | 131 (0.790) | intergenic (‑100/+201) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP | |||||
Only 100 of 255 total aligned reads displayed.
ATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAG > USA300TCH1516_ALE/2674443‑2674623 | tGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGc < 2:312498/91‑1 (MQ=255) gataaaattgtgaaaaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCa < 2:3108576‑M1/3‑1 (MQ=255) cTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAg < 1:3290809/91‑1 (MQ=255) ttACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCTGCTTCCATGTACAAAAAAAGCAGGc > 1:3214954/1‑91 (MQ=255) ttACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGc > 1:178190/1‑91 (MQ=255) tACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCa > 2:2911568/1‑91 (MQ=255) aaattgtgaaaaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCa > 1:3600936‑M1/85‑91 (MQ=255) aaattgtgaaaaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCa < 2:1709193‑M1/7‑1 (MQ=255) aaattgtgaaaaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCa < 1:2082307‑M1/7‑1 (MQ=255) attgtgaaaaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATg > 1:1320748‑M1/83‑91 (MQ=255) ttgtgaaaaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGa > 1:3470076‑M1/82‑91 (MQ=255) cGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAACTTCCGCTTCCATGTACAAAAAAAGCAGGCATGa > 2:1309453/1‑91 (MQ=255) gATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaa > 2:2195095/1‑91 (MQ=255) gATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaa < 1:1956556/91‑1 (MQ=255) gATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaa < 1:1090348/91‑1 (MQ=255) tACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaaca < 2:2414873/91‑1 (MQ=255) aCGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaacaa > 2:51125/1‑91 (MQ=255) gTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaacaaac > 1:1445152/1‑91 (MQ=255) ttGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaacaaaca < 2:1324149/91‑1 (MQ=255) aaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGaacaaaca < 2:1121873‑M1/17‑1 (MQ=255) gCAATTGGCCAAACAATTTCTTAAGCATATAAACAACCCCTATCTCAAGATCCGCTTCCATGTACAAAAAAAGCAGGCATGGACAAACAAg < 2:2230073/91‑1 (MQ=255) cAATTGTACAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACgaga < 2:3442015/91‑1 (MQ=255) aaTTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGAc > 1:269603/1‑91 (MQ=255) aTTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACt > 2:2786368/1‑91 (MQ=255) gTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTAtt > 1:3814276/1‑91 (MQ=255) tCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGTAGGCATGAACAAACAAGACTATtc > 1:395693/1‑91 (MQ=255) tCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATtc < 1:848758/91‑1 (MQ=255) tCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATtc < 1:2818839/91‑1 (MQ=255) tggaCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATtctc > 2:3356916/4‑91 (MQ=255) cAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATtctc < 2:886940/91‑1 (MQ=255) aaaCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCa < 2:1841134/91‑1 (MQ=255) aaaCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCa > 2:2786950/1‑91 (MQ=255) aaCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCAt < 2:777883/91‑1 (MQ=255) aaCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCAt < 1:101468/91‑1 (MQ=255) aaCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAACCAGGCATGAACAAACAAGACTATTCTCAt > 1:3108576/1‑91 (MQ=255) cAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAg < 2:2995670/91‑1 (MQ=255) cAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAg > 1:2859179/1‑91 (MQ=255) aaTTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGt < 2:3767178/91‑1 (MQ=255) aTTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTg < 2:178190/91‑1 (MQ=255) tttCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGc < 1:551423/91‑1 (MQ=255) tttCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGc > 1:3045051/1‑91 (MQ=255) ttCTTAAACATATAAACATCCCCTATCCCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCg < 1:1194597/91‑1 (MQ=255) cTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgt > 2:2194363/1‑91 (MQ=255) aaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttg > 2:1161635‑M1/52‑91 (MQ=255) aaaCATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttgt > 2:479628/1‑91 (MQ=255) atatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttgtt > 2:37796‑M1/50‑91 (MQ=255) aaCATATAAACATCCCCTATCTCAGTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttgtt < 2:3613503/91‑1 (MQ=255) tatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGttt > 1:3750251‑M1/49‑91 (MQ=255) tatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGttt > 1:1121873‑M1/49‑91 (MQ=255) tatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGttt > 1:2308709‑M1/49‑91 (MQ=255) cATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTg < 2:2624343/91‑1 (MQ=255) cATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTg < 1:489938/91‑1 (MQ=255) atgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTg > 2:1392226‑M1/48‑91 (MQ=255) tgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGc > 1:3176429‑M1/47‑91 (MQ=255) atatAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGc < 2:1536922/91‑1 (MQ=255) atatAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGc < 2:3491443/91‑1 (MQ=255) tataAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCt < 2:3283186/91‑1 (MQ=255) ataAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCa > 1:3385919/1‑73 (MQ=255) ataAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGAGGTTGTTTGCTc > 1:3780507/1‑91 (MQ=255) taAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCa > 2:659037/1‑91 (MQ=255) taAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCa > 1:825760/1‑91 (MQ=255) aaCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATg > 1:3681214/1‑91 (MQ=255) aCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGc < 1:2348996/91‑1 (MQ=255) aCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGc < 1:2198927/91‑1 (MQ=255) aCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGc < 1:2194706/91‑1 (MQ=255) cATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGcc > 2:1470939/1‑91 (MQ=255) cATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGcc > 1:3727043/1‑91 (MQ=255) aTCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCt < 1:973838/91‑1 (MQ=255) tCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTg > 2:1298050/1‑91 (MQ=255) tCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTg > 2:2283885/1‑91 (MQ=255) cccTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCa < 1:2659587/91‑1 (MQ=255) cccTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCa > 2:2250711/1‑91 (MQ=255) ccTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCAt < 1:1512380/91‑1 (MQ=255) cTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCAtt > 1:1474033/1‑91 (MQ=255) cTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCAtt > 1:1391795/1‑91 (MQ=255) cTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCAtt > 1:2019125/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc < 1:2756267/91‑1 (MQ=255) tctcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAcc < 1:916160/91‑1 (MQ=255) ctcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCa > 2:2092138/1‑91 (MQ=255) aaTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTa > 1:2553242/1‑91 (MQ=255) aTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTaa < 1:631685/91‑1 (MQ=255) ttCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAaca < 1:21378/91‑1 (MQ=255) tCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAacac < 1:695156/91‑1 (MQ=255) ccGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACg < 1:3536832/91‑1 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa > 2:922389/1‑91 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa > 2:92794/1‑91 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa > 2:2167977/1‑91 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa > 2:1708200/1‑91 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa > 1:160888/1‑91 (MQ=255) tCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGt < 1:3357063/91‑1 (MQ=255) ccATGTACAAAAAAAGCAGGCATGAACAAACAACACTGTTCTCATACTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTg > 1:3094134/1‑91 (MQ=255) tGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGata > 2:1969810/1‑91 (MQ=255) tGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGata < 2:584525/91‑1 (MQ=255) tGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGata > 2:104881/1‑91 (MQ=255) cAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTa < 2:3245299/91‑1 (MQ=255) cAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTa > 2:764123/1‑91 (MQ=255) aaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTc < 2:3039608/91‑1 (MQ=255) aaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCa < 2:3327727/91‑1 (MQ=255) aaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCAt < 2:1346407/91‑1 (MQ=255) aGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATa > 2:2364715/1‑91 (MQ=255) | ATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAG > USA300TCH1516_ALE/2674443‑2674623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |