| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2693372 | 153 (0.800) | 22 (0.130) | 13/144 | NT | 15.1% | intergenic (+43/+313) | mtrR/rocA | HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase |
| ? | USA300TCH1516_ALE | = 2693412 | 110 (0.640) | intergenic (+83/+273) | mtrR/rocA | HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase | |||||
TGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2693275‑2693372‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataaaaaACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTA < USA300TCH1516_ALE/2693412‑2693323 TGGCGAAGATATTGATAACATTTTCCATAGACTAATCAATATTAGGATTAAATAGTATATGAGAAACTCATGAGCGTTACCAACATTCATA < 1:3094824/91‑1 GGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAA > 2:3275901/1‑91 GGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAA > 2:3276008/1‑91 GGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAA < 2:349294/91‑1 CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATA < 1:1410030/91‑1 CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATA < 1:2816087/91‑1 CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATA < 2:2668853/91‑1 AAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAA < 1:1680893/91‑1 AAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAA < 1:1679529/91‑1 AAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAA < 1:1525898/91‑1 AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTACATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAA > 1:702948/1‑91 AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAA > 1:3533420/1‑91 AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAA > 1:329701/1‑91 AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAA > 1:329723/1‑91 TTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGAATTCATTAA < 2:1045257/91‑1 TTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGAATTCATTAA < 2:1960420/91‑1 AATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGAATTCATTAACG < 1:651415/91‑1 TCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGT < 1:1310870/91‑1 AATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGT < 2:2096429/91‑1 AATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGT < 2:2096392/91‑1 ATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACA < 1:3298223/91‑1 TAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACT < 2:516859/91‑1 TAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGAATTCATTAACGTGTACACTA < 1:1564915/91‑1 AAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTTATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTA < 2:574549/91‑1 GATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATC < 2:2579484/91‑1 ATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATC < 1:1060641/91‑1 ATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCG < 2:326254/91‑1 ATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCG < 2:3102352/91‑1 AAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTT < 2:3673850/91‑1 AATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTT < 1:3795985/91‑1 TAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTT < 1:2080193/91‑1 TAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTT < 1:2405003/91‑1 AGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTA < 2:1281906/91‑1 AGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTA < 2:3010442/91‑1 TAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATT < 1:524750/91‑1 TGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGA < 1:53792/91‑1 AATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTA < 2:224911/91‑1 AATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTA < 2:588282/91‑1 AATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTA > 1:1177141/1‑91 AATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTA > 1:1823633/1‑91 ATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTAC > 2:3097969/1‑91 ATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTAC > 1:2960524/1‑91 ATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTAC < 1:2951051/91‑1 ATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGATAACGCTCATGAGTTTCTCATCTAC > 1:3617565/1‑91 ATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGATAACGCTCATGAGTTTCTCATCTAC > 1:3617519/1‑91 TAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACT < 2:1613223/91‑1 TAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACT < 2:243716/91‑1 TAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACT < 2:3630106/91‑1 AAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATTGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTA < 1:2957742/91‑1 AAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTA < 2:2366474/91‑1 AAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTA > 1:2584303/1‑91 AAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTA > 2:1241352/1‑91 AAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATT < 1:3660143/91‑1 AAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACACTCATGAGTTTCTCATCTACTATTT > 1:3617977/1‑91 AACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTA > 1:1078596/1‑91 TGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2693275‑2693372‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataaaaaACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTA < USA300TCH1516_ALE/2693412‑2693323 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |