BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2693372	153 (0.800)	22 (0.130)	13/144	NT	15.1%	intergenic (+43/+313)	mtrR/rocA	HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase
*	?	USA300TCH1516_ALE	= 2693412	110 (0.640)	22 (0.130)	13/144	NT	15.1%	intergenic (+83/+273)	mtrR/rocA	HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase

Only 100 of 279 total aligned reads displayed.

ATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACAC  >  USA300TCH1516_ALE/2693283‑2693462

atatTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAc                                                                                           <  1:2500723/91‑1 (MQ=255)

 atttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACg                                                                                          >  1:3407362‑M1/85‑91 (MQ=255)

  tttagatagcggctttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGa                                                                                         <  1:2969115‑M1/8‑1 (MQ=255)

  tttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGa                                                                                         >  1:3459137‑M1/84‑91 (MQ=255)

  atTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGa                                                                                         <  1:2445340/91‑1 (MQ=255)

   ttGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGAt                                                                                        >  2:2272380/1‑91 (MQ=255)

   ttGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAAATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGAt                                                                                        >  1:3078999/1‑91 (MQ=255)

    tagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttcatagcgataagcacgataaaaataAAAAACGATa                                                                                       <  1:3782053‑M1/10‑1 (MQ=255)

     gATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAg                                                                                      <  2:3723395/91‑1 (MQ=255)

     agatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAg                                                                                      <  1:1593519‑M1/11‑1 (MQ=255)

     agatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAg                                                                                      <  2:545350‑M1/11‑1 (MQ=255)

     agatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAg                                                                                      <  1:1334038‑M1/11‑1 (MQ=255)

      aTAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAgt                                                                                     >  2:1341727/1‑91 (MQ=255)

       tAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAgtg                                                                                    <  1:1177240/91‑1 (MQ=255)

        aaCATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAgtgt                                                                                   <  1:1771872/91‑1 (MQ=255)

         aCATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTa                                                                                  >  1:789985/1‑91 (MQ=255)

           aTTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTaca                                                                                >  2:1719172/1‑91 (MQ=255)

            ttttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACGTTCATAATAAAAACGATAGTGTacac                                                                               <  2:2219994/91‑1 (MQ=255)

            ttttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTacac                                                                               >  2:589699/1‑91 (MQ=255)

              ttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGt                                                                             >  1:3863068/1‑91 (MQ=255)

              ttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGt                                                                             >  2:1836802/1‑91 (MQ=255)

               tCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGtt                                                                            >  1:1405462/1‑91 (MQ=255)

                ccATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTa                                                                           >  2:185512/1‑91 (MQ=255)

                ccATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTa                                                                           >  1:2201637/1‑91 (MQ=255)

                 cATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTaa                                                                          <  2:3331237/91‑1 (MQ=255)

                    aGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGa                                                                       >  1:3564282/1‑91 (MQ=255)

                    aGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGa                                                                       <  2:2593306/91‑1 (MQ=255)

                     gATTAATCAATATTAAGATTAAATAGTAGATGAGGAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGaa                                                                      <  2:46791/91‑1 (MQ=255)

                      aTTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAAt                                                                     >  2:1626258/1‑91 (MQ=255)

                       ttAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAacgatagtgtacacgaattcattaa                                                                   <  2:1045257‑M1/91‑26 (MQ=255)

                        tAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTc                                                                   >  1:580437/1‑91 (MQ=255)

                          aTCAATATTAAGATTAAATAGTAGATGAGAAACTCATCAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCgt                                                                 >  1:3271043/1‑91 (MQ=255)

                           tCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCgtg                                                                <  2:63086/91‑1 (MQ=255)

                           tCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCgtg                                                                >  2:3705056/1‑91 (MQ=255)

                           tCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAacgatagtagtacacgaattcattaacgt                                                               <  1:1310870‑M1/91‑30 (MQ=255)

                             aaTATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAacgatagtagtacacgaattcattaacgtgt                                                             <  2:2096429‑M1/91‑32 (MQ=255)

                               tagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTGTACACGTTAATGAATTCGTGtact                                                            >  1:3164928‑M1/55‑91 (MQ=255)

                                 ttAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGtactac                                                          >  2:1926161/1‑91 (MQ=255)

                                 gtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTGTACACGTTAATGAATTCGTGtactac                                                          >  1:3328254‑M1/53‑91 (MQ=255)

                                  tAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTactact                                                         <  1:863964/91‑1 (MQ=255)

                                   aaGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTTATAAT‑AAAAacgatagtagtacacgaattcattaacgtgtacacta                                                       <  2:574549‑M1/91‑38 (MQ=255)

                                    aGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTAt                                                       >  1:2728816/1‑91 (MQ=255)

                                      aTTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAacgatagtagtacacgaattcattaacgtgtacactatc                                                     <  1:1060641‑M1/91‑40 (MQ=255)

                                      aTTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCg                                                     <  1:3429817/91‑1 (MQ=255)

                                      aTTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAacgatagtagtacacgaattcattaacgtgtacactatcg                                                    <  2:3102352‑M1/91‑41 (MQ=255)

                                       ttAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGt                                                    <  2:1563950/91‑1 (MQ=255)

                                       gtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGt                                                    >  2:2641321‑M1/47‑91 (MQ=255)

                                         aaaTAGTAGATGAGAAACTCATGAGTGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtt                                                  >  1:3617977‑M2/1‑89 (MQ=255)

                                         aaaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAacgatagtagtacacgaattcattaacgtgtacactatcgttt                                                 <  2:3673850‑M1/91‑44 (MQ=255)

                                          aaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTttt                                                 <  1:3660143‑M2/91‑4 (MQ=255)

                                            tagtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAacgatagtagtacacgaattcattaacgtgtacactatcgttttt                                               <  1:2405003‑M1/91‑46 (MQ=255)

                                            tagtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTttttt                                               >  1:2584303‑M2/1‑86 (MQ=255)

                                            gtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGtttttt                                               >  2:1137‑M1/42‑91 (MQ=255)

                                            gtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGtttttt                                               >  1:2553930‑M1/42‑91 (MQ=255)

                                             agtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAacgatagtagtacacgaattcattaacgtgtacactatcgttttta                                              <  2:3010442‑M1/91‑47 (MQ=255)

                                             agtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAacgatagtagtacacgaattcattaacgtgtacactatcgttttta                                              <  2:1281906‑M1/91‑47 (MQ=255)

                                               tagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAacgatagtagtacacgaattcattaacgtgtacactatcgtttttatt                                            <  1:524750‑M1/91‑49 (MQ=255)

                                               tagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttatt                                            >  1:1823633‑M2/1‑83 (MQ=255)

                                                agATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttattt                                           >  1:2025076/1‑91 (MQ=255)

                                                agATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttattt                                           <  2:816201/91‑1 (MQ=255)

                                                  cagttgttttaatagcgataagcacgataaaaataAAAAACGATa                                                                                       >  1:2628496‑M1/36‑45 (MQ=255)

                                                   tGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAacgatagtagtacacgaattcattaacgtgtacactatcgtttttattatga                                        <  1:53792‑M1/91‑53 (MQ=255)

                                                    gagaAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTttttatttttat                                       <  1:211357/91‑1 (MQ=255)

                                                    gagaAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTttttatttttat                                       <  1:2835884/91‑1 (MQ=255)

                                                    gagaAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTttttatttttat                                       >  2:2381145/1‑91 (MQ=255)

                                                    gagaAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTttttatttttat                                       <  1:565142/91‑1 (MQ=255)

                                                      gaAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCg                                     >  1:659675/1‑91 (MQ=255)

                                                         aCTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGc                                  <  2:1579970/91‑1 (MQ=255)

                                                         aCTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGc                                  <  2:2529544/91‑1 (MQ=255)

                                                          cTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCt                                 >  1:2378103/1‑91 (MQ=255)

                                                           tCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCtt                                <  2:3419995/91‑1 (MQ=255)

                                                            cATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTa                               >  1:1434808/1‑91 (MQ=255)

                                                             aTGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAt                              >  2:3435765/1‑91 (MQ=255)

                                                             aTGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAt                              >  2:1416288/1‑91 (MQ=255)

                                                              tGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATc                             >  2:3573838/1‑91 (MQ=255)

                                                                aGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTACCGTTTTTTATTTTTATCGTGCTTATCGc                           <  2:1313376/91‑1 (MQ=255)

                                                                 gCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCt                          >  2:1593519/1‑91 (MQ=255)

                                                                  cGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTa                         <  1:3294190/91‑1 (MQ=255)

                                                                      aCCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaa                     >  2:306967/1‑91 (MQ=255)

                                                                        cAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa                   >  1:3833662/1‑91 (MQ=255)

                                                                        cAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa                   >  2:2388114/1‑91 (MQ=255)

                                                                        cAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa                   <  1:1749090/91‑1 (MQ=255)

                                                                        cAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa                   <  1:1519059/91‑1 (MQ=255)

                                                                          aCATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaaca                 <  2:801541/91‑1 (MQ=255)

                                                                           cATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaacaa                >  1:234061/1‑91 (MQ=255)

                                                                                ataataAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGAt           >  2:3221221/1‑91 (MQ=255)

                                                                                ataataAAAACGATAGTGTACACGTTAATGAACTCGTGTACTACTATCGTTTTTTATTTTTATCCTGCTTATCGCTATTAAAACAACTGAt           >  2:603332/1‑91 (MQ=255)

                                                                                 taataaAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATa          >  2:3732024/1‑91 (MQ=255)

                                                                                  aataaAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATac         <  1:3515676/91‑1 (MQ=255)

                                                                                  aataaAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATac         <  1:1090015/91‑1 (MQ=255)

                                                                                   ataaAAAacgatagtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctac        >  2:3097969‑M1/1‑7 (MQ=255)

                                                                                   ataaAAAacgatagtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctac        >  1:2960524‑M1/1‑7 (MQ=255)

                                                                                   ataaAAAacgatagtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctac        <  1:2951051‑M1/91‑85 (MQ=255)

                                                                                   ataaAAAacgatagtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttgataacgctcatgagtttctcatctac        >  1:3617565‑M1/1‑7 (MQ=255)

                                                                                     aaaaaacgatagtagtacacgaattcattaacgtgtacactattgtttttattatgaatgttggtaacgctcatgagtttctcatctacta      <  1:2957742‑M1/91‑87 (MQ=255)

                                                                                     aaaaaacgatagtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctacta      <  2:2366474‑M1/91‑87 (MQ=255)

                                                                                     aaaaaCGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttattatgaatgttggtaacgctcatgagtttctcatctacta      <  1:2080193‑M2/91‑47 (MQ=255)

                                                                                      AAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaa     >  2:2753176‑M1/1‑91 (MQ=255)

                                                                                         aCGGTAGTGTACACGTTAATGGATTCGTGTACTACTAGCGTTTTTGATTTTTATCGTGGTTATCGCTATTAAAACGACTGATgcacaacac  <  2:2498380/91‑1 (MQ=255)

                                                                                         ACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaacac  >  1:1025540‑M1/1‑91 (MQ=255)

ATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACAC  >  USA300TCH1516_ALE/2693283‑2693462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.