| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2740979 | 148 (0.780) | 18 (0.110) | 13/132 | NT | 12.6% | intergenic (+21/+60) | yhdG_2/USA300HOU_RS14115 | putative amino acid permease YhdG/Isoleucine 2‑epimerase |
| ? | USA300TCH1516_ALE | = 2741001 | 127 (0.810) | intergenic (+43/+38) | yhdG_2/USA300HOU_RS14115 | putative amino acid permease YhdG/Isoleucine 2‑epimerase | |||||
TTGTTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2740876‑2740979‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaatcatttccACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGTC < USA300TCH1516_ALE/2741001‑2740912 TTGTTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAA > 1:202314/1‑91 GTTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAA > 2:540024/1‑91 GTTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAA < 1:1357159/91‑1 GTTGGTATCATCCTATATTTAAGTCATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCAAAAAAAAAAAAAAAT‑AAAAA < 2:3613294/91‑1 TTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAA < 1:2886431/91‑1 TTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAA < 1:2886711/91‑1 TTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAA < 1:484004/91‑1 TGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAA < 1:1065242/91‑1 TGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAA < 2:1409512/91‑1 GGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAATTGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA > 1:2945011/1‑91 GGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA > 1:3323454/1‑91 GTATCATACTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAAT < 2:948547/91‑1 TATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATC < 1:1464120/91‑1 agCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCA < 2:2945439/89‑1 ATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAATTGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCA < 2:2945011/91‑1 ATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCA > 2:3382676/1‑91 ATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCA > 2:3383346/1‑91 ATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAA‑AAAAAAAATCA < 2:965215/91‑1 TCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCAT > 1:3604184/1‑91 TCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCAT < 1:3051691/91‑1 TCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCAT > 2:2988408/1‑91 ATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTT < 1:2782434/91‑1 acaTATATTTAAGTTATGGACTTAAACATTCAAAGAAAAATAACGTAGATAAATACCACCCACAAAAATAAAAAAT‑AAAAAAAATCATTTC < 2:3530233/88‑1 aCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCAACCACCAAAATAAAAAAT‑AAAAAAAATCATTTC < 2:3880365/90‑1 TCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTC > 1:1069743/1‑91 TCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTC < 1:3717321/91‑1 CCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCC < 2:1070054/91‑1 CCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCC < 1:3843215/91‑1 CCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCC < 1:804614/91‑1 CTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAAATCATTTCC > 2:916897/1‑91 TTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTG < 1:3787106/91‑1 ATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTA < 2:3310027/91‑1 tgaACTTAGACAATCTAAGAAAAATGACGTAGCTAAATAACAAAAAAAAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAA < 2:1287186/88‑1 GACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATATAAAAT‑‑‑AAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGA < 1:1690358/91‑1 ATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAA < 1:845083/91‑1 ATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAA < 1:418572/91‑1 TCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑GAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAAT < 2:2991804/91‑1 TCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAAT < 2:1053520/91‑1 AAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTT < 1:1631114/91‑1 AAAAATGACGTAGCTGAATACCAAAAAAAAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTT < 2:1414764/91‑1 AAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTT < 1:502668/91‑1 AAAATAACGAAGATAAATAAAACCAAACAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTT < 2:1682859/91‑1 AATGACGCAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTT < 1:1950685/91‑1 ATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTT < 2:1398731/91‑1 CGTAGCTGAATACCACCCACCAAAATAAAAAAT‑‑‑AAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTT < 2:2841494/91‑1 GTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTT < 2:3159217/91‑1 AGCTGAATACCACCCACCAAAATATAAAAT‑‑‑AAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTAT < 2:578298/91‑1 AGCTGAATACCACCCACCAAAATATAAAAT‑‑‑AAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTAT < 2:577982/91‑1 AAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTT > 1:870502/1‑91 AAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTT < 2:3115019/91‑1 AAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTT < 2:2450110/91‑1 AAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTT > 2:1937762/1‑91 AAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTT > 1:1003202/1‑91 AAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTT > 1:2130869/1‑91 AAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTT > 1:2130717/1‑91 AAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTT > 1:3027410/1‑91 AAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTT > 2:2896403/1‑91 AAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTT < 2:1256772/91‑1 AAATCATTTCCGCATCTGGATGTTAGTCAGGTGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTC < 2:1380222/91‑1 AAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTC < 2:1380200/91‑1 AAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTC > 1:3021201/1‑91 AAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGAGTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTC > 1:3369084/1‑91 AATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCT < 1:2282501/91‑1 AATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCT > 1:3171468/1‑91 ATCATTTCCACATCTGGATGTTACTCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTATGTCATTTTTCTT > 2:1748901/1‑91 ATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTT < 2:3001759/91‑1 ATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTT < 1:881931/91‑1 ATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTT < 2:548971/91‑1 TCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTA < 2:2271585/91‑1 TCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTA > 1:3544805/1‑91 CATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAG < 1:2815528/91‑1 TTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAA < 1:150372/91‑1 TTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAAT < 1:198529/91‑1 TTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAAT < 2:303828/91‑1 TCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATG > 1:1775423/1‑91 CCACATCTGGATGTTAATCAGATGGGCAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACTTCATTTTTCTTAGAATGT > 2:3215951/1‑91 CCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGT > 1:13293/1‑91 CCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGT > 1:12484/1‑91 CCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGT < 1:3668223/91‑1 CCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGT > 1:13933/1‑91 CCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGT < 1:3219543/91‑1 CCAAATCTGGATGTTAAACAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTTAGCTACGTCATTTTTTTTAGAATGT > 2:2522826/1‑91 CACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTTAGCTACGTCATTTTTTTTAGAATGTC > 2:336187/1‑91 CACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGTC > 1:2404301/1‑91 CACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGTC < 2:1220477/91‑1 TTGTTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2740876‑2740979‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaatcatttccACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGTC < USA300TCH1516_ALE/2741001‑2740912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |