BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 64	411 (0.740)	34 (0.100) +TTGTTATATTAAGTTTATTATAGCACTTTAAAT	16/94	NT	22.1%	intergenic (–/‑168)	–/repA	–/replication protein A
*	?	CP000731	= 27041	0 (0.000)	34 (0.100) +TTGTTATATTAAGTTTATTATAGCACTTTAAAT	16/94	NT	22.1%	intergenic (‑194/–)	USA300HOU_pUSA300HOUMR0033/–	partitioning protein/–

Only 100 of 660 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC  >  CP000731/1‑154

agctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTg                                                                                           >  2:3123977‑M1/27‑91 (MQ=255)

agctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTg                                                                                           <  1:1479347‑M1/65‑1 (MQ=255)

  ctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGt                                                                                         >  1:1262238‑M1/25‑91 (MQ=255)

    atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaa                                                                                       >  2:2840576‑M1/23‑91 (MQ=255)

    atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaa                                                                                       >  1:886549‑M1/23‑91 (MQ=255)

      attttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaata                                                                                     >  2:2634798‑M1/21‑91 (MQ=255)

       ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaataa                                                                                    >  1:764349‑M1/20‑91 (MQ=255)

        tttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATaaa                                                                                   >  2:1463358‑M1/19‑91 (MQ=255)

          tcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAAc                                                                                 >  2:1309588‑M1/17‑91 (MQ=255)

          tcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAAc                                                                                 >  2:157597‑M1/17‑91 (MQ=255)

           cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACg                                                                                >  2:3683511‑M1/16‑91 (MQ=255)

           cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACg                                                                                <  2:2335194‑M1/76‑1 (MQ=255)

            ccttttataagtttAATTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTGCTGGTAATAGTCGGGGTTTGGTAATAAAACGt                                                                               <  1:3302645‑M1/77‑1 (MQ=255)

             cttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGtt                                                                              >  1:21657‑M1/14‑91 (MQ=255)

              ttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGttt                                                                             >  2:1567720‑M1/13‑91 (MQ=255)

               tttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTa                                                                            <  2:866455‑M1/80‑1 (MQ=255)

                ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTtag                                                                           <  1:2564486‑M1/81‑2 (MQ=255)

                ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTtag                                                                           <  1:3696439‑M1/81‑2 (MQ=255)

                ttataagtttATTTAAAGTGCTATAATAAACTAAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTtag                                                                           >  2:229889‑M1/11‑90 (MQ=255)

                    aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                       <  2:1244601‑M1/85‑1 (MQ=255)

                     agtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                                      >  2:2404660‑M1/6‑91 (MQ=255)

                     agtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                                      <  1:524922‑M1/86‑1 (MQ=255)

                     agtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                                      <  2:1118103‑M1/86‑1 (MQ=255)

                      gtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTg                                                                     <  1:1558542‑M1/87‑1 (MQ=255)

                      gtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTg                                                                     >  1:965293‑M1/5‑91 (MQ=255)

                      gtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTg                                                                     >  2:3070539‑M1/5‑91 (MQ=255)

                       tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                                    <  1:1665158‑M1/88‑1 (MQ=255)

                       tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                                    >  2:2359142‑M1/4‑91 (MQ=255)

                           tttAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttat                                                                >  1:1367531/1‑91 (MQ=255)

                              aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                             >  1:2025443/1‑91 (MQ=255)

                              aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                             >  1:692628/1‑91 (MQ=255)

                              aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                             <  1:3536430/91‑1 (MQ=255)

                               aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                            >  2:2425017/1‑91 (MQ=255)

                               aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGGCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                            <  2:3197087/91‑1 (MQ=255)

                                 gTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                          >  1:3142003/1‑91 (MQ=255)

                                   gCTATAATAACCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATaa                                                        >  1:2449709/1‑91 (MQ=255)

                                   gCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATaa                                                        >  2:300214/1‑91 (MQ=255)

                                    cTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAt                                                       >  2:3625694/1‑91 (MQ=255)

                                     tataATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtt                                                      >  2:2611964/1‑91 (MQ=255)

                                     tataATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtt                                                      <  2:1036600/91‑1 (MQ=255)

                                     tataATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtt                                                      >  1:1019873/1‑91 (MQ=255)

                                      ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                                     <  1:2500292/91‑1 (MQ=255)

                                        aataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTc                                                   >  2:1764545/1‑91 (MQ=255)

                                           aaaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATGTTCGAt                                                <  1:3016194/91‑1 (MQ=255)

                                             aCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATAc                                              <  1:2631716/91‑1 (MQ=255)

                                             aCTTAATATAACAAAAACCCCAACTACTGATAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATAc                                              <  1:2935624/91‑1 (MQ=255)

                                              cTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                             <  2:1204527/91‑1 (MQ=255)

                                               ttAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACtt                                            <  2:3278399/91‑1 (MQ=255)

                                               ttAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACtt                                            <  1:1141725/91‑1 (MQ=255)

                                                tAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTg                                           >  1:386029/1‑91 (MQ=255)

                                                tAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTg                                           <  2:605694/91‑1 (MQ=255)

                                                 aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGt                                          <  2:2497580/91‑1 (MQ=255)

                                                  atatAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                         <  2:2913521/91‑1 (MQ=255)

                                                  atatAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACGGTTTATTTATATAATTTTCGATACTTGta                                         <  2:637467/91‑1 (MQ=255)

                                                   tataACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtat                                        >  2:1907845/1‑91 (MQ=255)

                                                     taACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatta                                      >  1:2276375/1‑91 (MQ=255)

                                                     taACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatta                                      <  2:3430798/91‑1 (MQ=255)

                                                       aCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtata                                    >  1:93436/1‑91 (MQ=255)

                                                        cAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatat                                   >  2:3507581/1‑91 (MQ=255)

                                                         aaaaaCCCCAACTACTGGTAATAGTCGGGGTTTttgttatattaagtttattatagcactttaaataaacttataaaagggaaaatatagc                                  >  1:2729174‑M1/1‑33 (MQ=255)

                                                          aaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATaa                                 <  1:409933/91‑1 (MQ=255)

                                                             aCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGa                              <  1:2338535/91‑1 (MQ=255)

                                                             aCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGa                              >  1:3385550/1‑91 (MQ=255)

                                                             aCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGa                              <  2:400541/91‑1 (MQ=255)

                                                              ccccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaa                             >  2:2171646/1‑91 (MQ=255)

                                                                ccAACTACTGGTAATAGTCGGGGTTTttgttatattaagtttattatagcactttaaataaacttataaaagggaaaatatagctttatca                           >  1:2809881‑M1/1‑26 (MQ=255)

                                                                ccAACTACTGGTAATAGTCGGGGTTTttgttatattaagtttattatagcactttaaataaacttataaaagggaaaatatagctttatca                           >  2:2093802‑M1/1‑26 (MQ=255)

                                                                ccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaata                           <  1:805251/91‑1 (MQ=255)

                                                                 cAACTACTGGTAATAGTCGGGGTTTttgttatattaagtttattatagcactttaaataaacttataaaagggaaaatatagctttatcaa                          >  2:1674320‑M1/1‑25 (MQ=255)

                                                                 cAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                          >  2:693468/1‑91 (MQ=255)

                                                                  aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                         >  2:1161192/1‑91 (MQ=255)

                                                                   actactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAataata                        <  1:1805382/91‑1 (MQ=255)

                                                                    ctactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAatat                       >  2:2041665/1‑91 (MQ=255)

                                                                       ctGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt                    <  1:499952/91‑1 (MQ=255)

                                                                       ctGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt                    >  2:1600088/1‑91 (MQ=255)

                                                                        tGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTa                   >  2:3325712/1‑91 (MQ=255)

                                                                        tGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTa                   <  2:2686853/91‑1 (MQ=255)

                                                                         ggTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg                  >  1:674224/1‑91 (MQ=255)

                                                                          gTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGt                 <  1:3227367/91‑1 (MQ=255)

                                                                          gTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGt                 <  2:3770132/91‑1 (MQ=255)

                                                                           tAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTg                <  2:2223395/91‑1 (MQ=255)

                                                                             aTAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCa              <  2:552143/91‑1 (MQ=255)

                                                                              tAGTCGGGGTTTGGTAATAAAACGTTTAGACACTGTTTATTTATATAATTCTCGATACTTGTATTATATAATGAATAATATCTTAGTGCaa             >  2:1995577/1‑91 (MQ=255)

                                                                                gTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGc           >  1:2689791/1‑91 (MQ=255)

                                                                                gTCGGGGTTTGGTAATAAAACGATTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGc           >  1:2409919/1‑91 (MQ=255)

                                                                                 tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCa          >  1:1054211/1‑91 (MQ=255)

                                                                                 tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCa          <  2:1380594/91‑1 (MQ=255)

                                                                                   ggggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc        <  2:796698/91‑1 (MQ=255)

                                                                                   ggggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc        >  1:19085/1‑91 (MQ=255)

                                                                                   ggggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc        >  1:608963/1‑91 (MQ=255)

                                                                                   ggggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc        <  2:1878530/91‑1 (MQ=255)

                                                                                   ggggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc        <  1:3625694/91‑1 (MQ=255)

                                                                                   ggggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc        <  2:459926/91‑1 (MQ=255)

                                                                                    gggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCt       >  1:3462834/1‑91 (MQ=255)

                                                                                     ggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTa      >  1:2885708/1‑91 (MQ=255)

                                                                                     ggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTa      <  1:1199698/91‑1 (MQ=255)

                                                                                      gTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTaa     <  1:3803489/91‑1 (MQ=255)

                                                                                         tGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTg                <  2:2557708/77‑1 (MQ=255)

                                                                                         tGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATc  <  1:1109191/91‑1 (MQ=255)

                                                                                         tGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATc  >  1:2044218/1‑91 (MQ=255)

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC  >  CP000731/1‑154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.