| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 17001 | NA (NA) | 32 (0.060) | 16/148 | NT | 100% | coding (61/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase |
| ? | CP000731 | = 17016 | 0 (0.000) | coding (46/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase | |||||
GATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATA > CP000731/16921‑17090 | gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG > 1:706830‑M2/1‑91 (MQ=255)gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG < 2:2025141‑M2/91‑1 (MQ=255)gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG < 1:2951644‑M2/91‑1 (MQ=255)gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG > 2:1413418‑M2/1‑91 (MQ=255)gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG > 2:2897509‑M2/1‑91 (MQ=255)gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG < 1:3593899‑M2/91‑1 (MQ=255) accgtTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG > 2:2067402‑M2/3‑91 (MQ=255) aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG > 1:2138834‑M2/1‑91 (MQ=255) aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG > 2:2295100‑M2/1‑91 (MQ=255) aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG < 1:2039692‑M2/91‑1 (MQ=255) aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG > 2:160209‑M2/1‑91 (MQ=255) aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG < 1:1794332‑M2/91‑1 (MQ=255) aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG > 1:177790‑M2/1‑91 (MQ=255) aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG < 2:2271046‑M2/91‑1 (MQ=255) aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG > 2:2831191‑M2/1‑91 (MQ=255) aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG > 2:422480‑M2/1‑91 (MQ=255) aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG > 1:1474930‑M2/1‑91 (MQ=255) aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG > 2:55345‑M2/1‑91 (MQ=255) aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG > 2:1233841‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGTCAACGGC < 1:1935169‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 1:2802438‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 1:2595591‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 1:2595194‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 1:23390‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 1:253115‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 2:1468171‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 2:546364‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 1:3696725‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 1:60971‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 1:694211‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 1:694464‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 1:745165‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 1:1817203‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 2:339924‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 1:1074503‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 2:3210976‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 1:1234799‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 2:864892‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 1:1424225‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 1:1688712‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 2:3713378‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 2:2653206‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 1:1775494‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 1:253114‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 2:242304‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 1:1916393‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 1:2104903‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC > 1:2186059‑M2/1‑91 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC < 1:23327‑M2/91‑1 (MQ=255) tCGTTGAATGATGAACGTTTACACCACGTTCGCTTAATATTTCAGATATATCATGATAGCTCAATGCTTATCTTAGATAGTAGCCAACGGC > 1:3096243‑M2/1‑91 (MQ=255) cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGTTATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT > 2:136545‑M2/1‑91 (MQ=255) cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT < 2:2471458‑M2/91‑1 (MQ=255) cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT > 2:1526544‑M2/1‑91 (MQ=255) cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT > 1:88970‑M2/1‑91 (MQ=255) cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT > 1:1023330‑M2/1‑91 (MQ=255) cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT > 2:2251324‑M2/1‑91 (MQ=255) cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT < 2:2076668‑M2/91‑1 (MQ=255) cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT > 1:681022‑M2/1‑91 (MQ=255) cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT > 1:666518‑M2/1‑91 (MQ=255) cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT > 2:723752‑M2/1‑91 (MQ=255) cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT > 1:2434852‑M2/1‑91 (MQ=255) gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA < 1:2193107‑M2/91‑1 (MQ=255) gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA > 2:2890712‑M2/1‑91 (MQ=255) gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA < 1:1762777‑M2/91‑1 (MQ=255) gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA > 1:1878239‑M2/1‑91 (MQ=255) gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA < 1:789280‑M2/91‑1 (MQ=255) gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA > 1:527709‑M2/1‑91 (MQ=255) gTTGAATGATGAACGTTTACACCACGCTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA < 2:2206121‑M2/91‑1 (MQ=255) ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC > 1:1169701‑M2/1‑91 (MQ=255) ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC > 1:34301‑M2/1‑91 (MQ=255) ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC > 2:2770955‑M2/1‑91 (MQ=255) ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC < 1:962043‑M2/91‑1 (MQ=255) ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGACTAC > 1:3420739‑M2/1‑91 (MQ=255) ttGAATGATGAACGTTTACACCACGTTCTCTTAATAGTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC > 2:593073‑M2/1‑91 (MQ=255) ttGAAGGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAATGGCTAC > 1:3023444‑M2/1‑91 (MQ=255) tgatgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA < 1:303055‑M2/85‑1 (MQ=255) tgatgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA > 2:303055‑M2/1‑85 (MQ=255) gatgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatcta > 1:2818699‑M2/1‑85 (MQ=255) atgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaa > 1:2752100‑M2/1‑84 (MQ=255) atgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaa > 2:629127‑M2/1‑84 (MQ=255) tgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaag > 1:1743196‑M2/1‑83 (MQ=255) tgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaag > 2:2894417‑M2/1‑83 (MQ=255) tgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaag > 2:2894560‑M2/1‑83 (MQ=255) gaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaaga > 1:155877‑M2/1‑82 (MQ=255) aaCGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaagat > 1:2131732‑M2/1‑81 (MQ=255) cacGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaagatatgcattgagc > 1:1053208‑M2/1‑70 (MQ=255) tAATATTTCAGGTATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaagatatgcattgagctatcgtgata > 1:3517055‑M2/1‑60 (MQ=255) atatTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaagatatgcattgagctatcgtgatata > 1:1882377‑M2/1‑58 (MQ=255) atTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaagatatgcattgagctatcgtgatatatc > 1:1754568‑M2/1‑56 (MQ=255) atGTCAGATAGATCACGATAGCTCAATGCATAGCTTAGATAGTAGCCGTTGGCTACtatctaagatatgcattgagctatcgtgatatatc > 2:2811966‑M2/1‑56 (MQ=255) tCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaagatatgcattgagctatcgtgatatatctga > 1:423926‑M2/1‑53 (MQ=255) gATAGTAGCCAACGGCTACtatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcat < 1:2747085‑M2/91‑73 (MQ=255) gATAGTAGCCAACGGCTACtatctaagatatacattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcat < 2:564579‑M2/91‑73 (MQ=255) gATAGTAGCCAACGGCTACtatctaagatatacattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcat < 1:1318692‑M2/91‑73 (MQ=255) aTAGTAGCCAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcatt < 1:247735‑M2/91‑74 (MQ=255) tagtagCCAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattc < 2:448257‑M2/91‑75 (MQ=255) | GATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATA > CP000731/16921‑17090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |