BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 17001	NA (NA)	32 (0.060)	16/148	NT	100%	coding (61/675 nt)	USA300HOU_pUSA300HOUMR0021	IS431 mec transposase
*	?	CP000731	= 17016	0 (0.000)	32 (0.060)	16/148	NT	100%	coding (46/675 nt)	USA300HOU_pUSA300HOUMR0021	IS431 mec transposase

Only 100 of 147 total aligned reads displayed.

TTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATATTATAAATTCAACTTT  >  CP000731/16926‑17106

ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC                                                                                            >  2:2770955‑M2/1‑91 (MQ=255)

ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC                                                                                            <  1:962043‑M2/91‑1 (MQ=255)

ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC                                                                                            >  1:34301‑M2/1‑91 (MQ=255)

ttGAATGATGAACGTTTACACCACGTTCTCTTAATAGTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC                                                                                            >  2:593073‑M2/1‑91 (MQ=255)

      gatgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatcta                                                                                      >  1:2818699‑M2/1‑85 (MQ=255)

       atgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaa                                                                                     >  2:629127‑M2/1‑84 (MQ=255)

       atgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaa                                                                                     >  1:2752100‑M2/1‑84 (MQ=255)

        tgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaag                                                                                    >  2:2894417‑M2/1‑83 (MQ=255)

        tgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaag                                                                                    >  2:2894560‑M2/1‑83 (MQ=255)

        tgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaag                                                                                    >  1:1743196‑M2/1‑83 (MQ=255)

         gaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaaga                                                                                   >  1:155877‑M2/1‑82 (MQ=255)

          aaCGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaagat                                                                                  >  1:2131732‑M2/1‑81 (MQ=255)

                     cacGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaagatatgcattgagc                                                                       >  1:1053208‑M2/1‑70 (MQ=255)

                                 atatTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaagatatgcattgagctatcgtgatata                                                           >  1:1882377‑M2/1‑58 (MQ=255)

                                   atGTCAGATAGATCACGATAGCTCAATGCATAGCTTAGATAGTAGCCGTTGGCTACtatctaagatatgcattgagctatcgtgatatatc                                                         >  2:2811966‑M2/1‑56 (MQ=255)

                                      tCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaagatatgcattgagctatcgtgatatatctga                                                      >  1:423926‑M2/1‑53 (MQ=255)

                                                                        gATAGTAGCCAACGGCTACtatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcat                    <  1:2747085‑M2/91‑73 (MQ=255)

                                                                        gATAGTAGCCAACGGCTACtatctaagatatacattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcat                    <  1:1318692‑M2/91‑73 (MQ=255)

                                                                         aTAGTAGCCAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcatt                   <  1:247735‑M2/91‑74 (MQ=255)

                                                                              agCCAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacg              <  1:1961161‑M2/91‑79 (MQ=255)

                                                                              agCCAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacg              <  1:803042‑M2/91‑79 (MQ=255)

                                                                              agCCAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacg              <  1:2545858‑M2/91‑79 (MQ=255)

                                                                              agCCAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacg              <  2:2798353‑M2/91‑79 (MQ=255)

                                                                               gCCAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacga             <  1:1892112‑M2/91‑80 (MQ=255)

                                                                               gCCAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacga             <  1:816208‑M2/91‑80 (MQ=255)

                                                                               gCCAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacga             <  1:584302‑M2/91‑80 (MQ=255)

                                                                                ccAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgat            <  1:386715‑M2/91‑81 (MQ=255)

                                                                                ccAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgat            <  2:1937289‑M2/91‑81 (MQ=255)

                                                                                ccAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgat            <  1:3186586‑M2/91‑81 (MQ=255)

                                                                                ccAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgat            <  1:1727714‑M2/91‑81 (MQ=255)

                                                                                ccAACGGCTACtatctaagatatgcattgagctaccgtgatatatctgaaatattaagcgaacgtggtgtaaacgttcatcattcaacgat            <  2:3640329‑M2/91‑81 (MQ=255)

                                                                                 cAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatc           <  2:2621620‑M2/91‑82 (MQ=255)

                                                                                 cAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatc           <  1:2049673‑M2/91‑82 (MQ=255)

                                                                                 cAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatc           <  1:1355145‑M2/91‑82 (MQ=255)

                                                                                 cAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatc           <  1:1475091‑M2/91‑82 (MQ=255)

                                                                                 cAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatc           <  1:3481144‑M2/91‑82 (MQ=255)

                                                                                 cAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatc           <  1:3480913‑M2/91‑82 (MQ=255)

                                                                                 cAACGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatc           <  1:3429965‑M2/91‑82 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  1:2264866‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  2:475014‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  1:58405‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  1:3660765‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  1:122309‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  2:3829896‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  1:3375132‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  1:1592067‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  1:92444‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  2:1273985‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  2:1703252‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  1:2974533‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  1:1751743‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  2:3466382‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  1:196434‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  2:2227498‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatct          <  1:2511847‑M2/91‑83 (MQ=255)

                                                                                  aaCGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggagtaaacgttcatcattcaacgatct          <  1:3600550‑M2/91‑83 (MQ=255)

                                                                                    cGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctac        <  1:2526571‑M2/91‑85 (MQ=255)

                                                                                    cGGCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctac        <  2:1296964‑M2/91‑85 (MQ=255)

                                                                                     ggCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctacc       >  1:1063018‑M2/1‑6 (MQ=255)

                                                                                     ggCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctacc       >  1:1123595‑M2/1‑6 (MQ=255)

                                                                                     ggCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctacc       <  1:474221‑M2/91‑86 (MQ=255)

                                                                                     ggCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctacc       <  2:426981‑M2/91‑86 (MQ=255)

                                                                                     ggCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctacc       >  1:7477‑M2/1‑6 (MQ=255)

                                                                                     ggCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctacc       <  2:2181838‑M2/91‑86 (MQ=255)

                                                                                     ggCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctacc       <  1:3198325‑M2/91‑86 (MQ=255)

                                                                                      gCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccg      <  2:2114378‑M2/91‑87 (MQ=255)

                                                                                      gCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccg      <  2:1590503‑M2/91‑87 (MQ=255)

                                                                                      gCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccg      >  1:460086‑M2/1‑5 (MQ=255)

                                                                                      gCTACtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccg      <  1:3589171‑M2/91‑87 (MQ=255)

                                                                                       ctagtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatcttccgt     >  1:3062170‑M2/1‑4 (MQ=255)

                                                                                       ctagtatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatcttccgt     >  1:3061727‑M2/1‑4 (MQ=255)

                                                                                       ctactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaatcgttcatcattcaacgatctaccgt     <  1:3605228‑M2/91‑88 (MQ=255)

                                                                                       ctactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgt     >  2:3209702‑M2/1‑4 (MQ=255)

                                                                                       ctactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgt     >  1:2067272‑M2/1‑4 (MQ=255)

                                                                                       ctactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgt     <  1:2079042‑M2/91‑88 (MQ=255)

                                                                                       ctactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgt     >  2:32546‑M2/1‑4 (MQ=255)

                                                                                       ctactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgt     <  1:2639781‑M2/91‑88 (MQ=255)

                                                                                       ctactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgt     <  2:3520749‑M2/91‑88 (MQ=255)

                                                                                       ctactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgt     >  1:151957‑M2/1‑4 (MQ=255)

                                                                                       ctactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgt     >  1:3737223‑M2/1‑4 (MQ=255)

                                                                                       ctactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgt     >  1:3003902‑M2/1‑4 (MQ=255)

                                                                                       ctactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgt     >  2:1322755‑M2/1‑4 (MQ=255)

                                                                                        ttctatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgtt    <  1:3096060‑M2/89‑89 (MQ=255)

                                                                                        tactatctaagatatgcattgagctatcgtgatatatctgaaatattaagaggacgtggtgtaaacgttcatcattcaacgatctaccgtt    >  2:516069‑M2/1‑3 (MQ=255)

                                                                                        tactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgtt    <  1:3828266‑M2/91‑89 (MQ=255)

                                                                                        tactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgtt    >  2:3632065‑M2/1‑3 (MQ=255)

                                                                                        tactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgtt    <  2:1917507‑M2/91‑89 (MQ=255)

                                                                                        tactatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgtt    <  1:1886430‑M2/91‑89 (MQ=255)

                                                                                        tactatctaagatatgcattgagctatcgtgatatacctgaaatattaagagaacgtggtgtacacgttcatcattcaacgatctaccgtt    <  2:1137940‑M2/91‑89 (MQ=255)

                                                                                         actatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgttg   >  1:2686445‑M2/1‑2 (MQ=255)

                                                                                         actatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgttg   <  1:1631605‑M2/91‑90 (MQ=255)

                                                                                         actatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgttg   <  1:2793852‑M2/91‑90 (MQ=255)

                                                                                         actatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgttg   >  1:1176243‑M2/1‑2 (MQ=255)

                                                                                         actatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgttg   <  2:1768993‑M2/91‑90 (MQ=255)

                                                                                         actatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctac        <  1:2080555‑M2/86‑85 (MQ=255)

                                                                                         actatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctac        >  2:2080555‑M2/1‑2 (MQ=255)

                                                                                         actatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgaactaccgttg   <  1:3806399‑M2/91‑90 (MQ=255)

                                                                                          ctatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgttgg  >  1:2384725‑M2/1‑1 (MQ=255)

                                                                                          ctatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctaccgttgg  <  1:856944‑M2/91‑91 (MQ=255)

                                                                                          ctatctaagatatgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacgatctacagttgg  <  2:2364839‑M2/91‑91 (MQ=255)

TTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATATTATAAATTCAACTTT  >  CP000731/16926‑17106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.