| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | 17189 = | 357 (0.640) | 32 (0.070) | 13/138 | NT | 9.3% | intergenic (‑128/+119) | USA300HOU_pUSA300HOUMR0021/USA300HOU_pUSA300HOUMR0023 | IS431 mec transposase/bacitracin ABC ATP binding cassette transporter, membrane protein |
| ? | CP000731 | 17225 = | 319 (0.670) | intergenic (‑164/+83) | USA300HOU_pUSA300HOUMR0021/USA300HOU_pUSA300HOUMR0023 | IS431 mec transposase/bacitracin ABC ATP binding cassette transporter, membrane protein | |||||
Only 100 of 609 total aligned reads displayed.
TCAACTTTGCAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTG > CP000731/17099‑17279 | aagttaaaaggaggagaaaaatgggttttatagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagt > 1:1204320‑M1/91‑91 (MQ=255) gttaaaaggaggagaaaaatgggttttatagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTat > 1:3456271‑M1/89‑91 (MQ=255) aCTTTGCAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATC > 1:1054144‑M1/1‑91 (MQ=255) aCTTTGCAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATC > 2:1608732‑M1/1‑91 (MQ=255) cTTTGCAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCA < 2:3871179‑M1/91‑1 (MQ=255) cTTTGCAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCA > 1:948730‑M1/1‑91 (MQ=255) aaaaggaggagaaaaatgggttttatagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTatcat < 2:1183429‑M1/6‑1 (MQ=255) aaaacgaggagaaaaatgggtttaatagagcagattaaagcatttactttaggtgtagttgaagggttgacagaatttgctccagTatcat < 1:3070731‑M1/6‑1 (MQ=255) ttGCAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATC < 1:214481‑M1/91‑1 (MQ=255) aaaggaggagaaaaatgggttttatagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTatcatc > 1:2405501‑M1/85‑91 (MQ=255) aaaggaggagaaaaatgggttttatagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTatcatc < 1:3581459‑M1/7‑1 (MQ=255) tGCAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCA < 2:1257507‑M1/91‑1 (MQ=255) tGCAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCA > 1:768676‑M1/1‑91 (MQ=255) tGCAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCA > 2:434234‑M1/1‑91 (MQ=255) tGCAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCA < 2:791072‑M1/91‑1 (MQ=255) aaggaggagaaaaatgggttttatagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTAtcatca < 1:2305361‑M1/8‑1 (MQ=255) aaggaggagaaaaatgggttttatagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTAtcatca < 1:255594‑M1/8‑1 (MQ=255) gCAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAA > 2:2265110‑M1/1‑91 (MQ=255) aggaggagaaaaatgggttttatagagcacattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagGATCATcaa < 2:3376200‑M1/9‑1 (MQ=255) ggaggagaaaaatgggttttatagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTATCATcaac < 2:2962649‑M1/10‑1 (MQ=255) cAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAAC > 1:467961‑M1/1‑91 (MQ=255) aCAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATcaacaa > 1:1745740/1‑91 (MQ=255) cAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACaat > 2:2289605/1‑91 (MQ=255) gAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACaataa > 2:2760006/1‑91 (MQ=255) gAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACaataa < 1:109986/91‑1 (MQ=255) cctcctAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCa < 1:694076/91‑1 (MQ=255) cctcctAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCa < 1:2628766/91‑1 (MQ=255) cctAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCatat > 2:941223/1‑91 (MQ=255) ctAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATg > 1:1298743/1‑91 (MQ=255) ctAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATg > 1:874466/1‑91 (MQ=255) ctAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATg < 1:1444684/91‑1 (MQ=255) tAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGa < 1:2849236/91‑1 (MQ=255) aaCTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGAc < 2:1764083/91‑1 (MQ=255) aCTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGAcc > 2:734560/1‑91 (MQ=255) tttatagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTATCATCAACAATAATCATATGACCTg > 1:3495046‑M1/65‑91 (MQ=255) gTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgt > 2:2142290‑M2/1‑88 (MQ=255) gTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgt < 1:325966‑M2/91‑4 (MQ=255) atagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTATCATCAACAATAATCATATGACCTGTtg > 2:2466409‑M1/62‑91 (MQ=255) aTTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttg > 2:2235620‑M2/1‑86 (MQ=255) tagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTATCATCAACAATAATCATATGACCTGTtga > 1:2244561‑M1/61‑91 (MQ=255) tACCACCTTAAAAGTAGTTGCAGACGCGCTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgat > 2:3801002‑M2/1‑84 (MQ=255) tACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgat < 1:340176‑M2/91‑8 (MQ=255) tACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgat > 2:2722662‑M2/1‑84 (MQ=255) agagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTATCATCAACAATAATCATATGACCTGTtgat > 1:3769819‑M1/60‑91 (MQ=255) accaccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatg < 2:3769518‑M2/91‑9 (MQ=255) ccaccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatga < 1:1707668‑M2/91‑10 (MQ=255) ccaccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatga < 2:3458792‑M2/91‑10 (MQ=255) agcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTATCATCAACAATAATCATATGACCTGTtgatga > 1:2896503‑M1/58‑91 (MQ=255) caccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatgat > 2:643823‑M2/1‑81 (MQ=255) caccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatgat < 2:2058555‑M2/91‑11 (MQ=255) cTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACt > 2:2840182/1‑91 (MQ=255) cTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACt > 2:2627342/1‑91 (MQ=255) ttAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTg < 1:2946253/91‑1 (MQ=255) ttAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTg < 2:141612/91‑1 (MQ=255) tAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGa < 1:2496990/74‑1 (MQ=255) tAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTgg > 2:1300288/1‑91 (MQ=255) aaaaGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGa < 1:3841746/91‑1 (MQ=255) aaaaGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGa < 2:2924620/91‑1 (MQ=255) aaaaGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGa < 2:3253406/91‑1 (MQ=255) aaaGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAg > 2:1704069/1‑91 (MQ=255) agtagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCa < 2:3126946/91‑1 (MQ=255) agtagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCa > 1:544986/1‑91 (MQ=255) agtagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCa > 2:848672/1‑91 (MQ=255) gtagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCaa < 2:3717368/91‑1 (MQ=255) agtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAAt < 1:2727680/91‑1 (MQ=255) agtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAAt < 2:1119408/91‑1 (MQ=255) agtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAAt < 1:1146261/91‑1 (MQ=255) gtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAAtt > 2:1485278/1‑91 (MQ=255) gtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAAtt < 1:1667086/91‑1 (MQ=255) ttGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTc > 2:3037937/1‑91 (MQ=255) tGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAACCATATGACCTGTTGCTGATACTGGAGCAAATTCt > 1:2523842/1‑91 (MQ=255) gCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTg < 2:2575517/91‑1 (MQ=255) gACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCa < 1:2715065/91‑1 (MQ=255) gCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAAcc > 2:2547542/1‑91 (MQ=255) cACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCaaa > 2:3345583/1‑79 (MQ=255) cACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCaaa < 1:3345583/79‑1 (MQ=255) cACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAAccc > 1:1253231/1‑91 (MQ=255) tgtagttgaagggttgacagaatttgctccagTATCATCAACAATAATCATATGACCTGtt < 1:612660‑M1/29‑1 (MQ=255) aCTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCt < 1:1903433/91‑1 (MQ=255) cTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCt > 1:1849441/1‑90 (MQ=255) ttCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTc < 1:1506240/91‑1 (MQ=255) ccTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCaa < 1:2013979/91‑1 (MQ=255) cTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAAc < 1:2177568/91‑1 (MQ=255) aaaTCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCATCAACTa > 1:1944399/1‑91 (MQ=255) aaTCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTac < 1:1019049/91‑1 (MQ=255) cGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACAcc > 1:1604096/1‑91 (MQ=255) gTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCt < 1:1385069/91‑1 (MQ=255) cagTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAcaat > 1:3130482/1‑91 (MQ=255) cagTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaat > 2:2381664/1‑91 (MQ=255) cagTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaat < 2:529438/91‑1 (MQ=255) tgtTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaataaa < 1:3699310/91‑1 (MQ=255) tttAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATg < 2:47293/91‑1 (MQ=255) aaCCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCtt < 1:2096640/91‑1 (MQ=255) aCCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCttt > 2:3510020/1‑91 (MQ=255) aCCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCttt > 2:355929/1‑91 (MQ=255) aCCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCttt < 2:1977299/91‑1 (MQ=255) cacaTATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTaa > 1:917914/1‑91 (MQ=255) caTATCATCCACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACCCCTAAAATAAATGCTTTAATc > 2:1859866/1‑91 (MQ=255) atatCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCt < 1:98680/91‑1 (MQ=255) TATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTg > 1:316225‑M1/1‑91 (MQ=255) | TCAACTTTGCAACAGAACCTCCTAACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTG > CP000731/17099‑17279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |