BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	987 =	5283 (0.440)	1068 (0.100)	42/138	NT	20.4%	pseudogene (708/709 nt)	USA300HOU_RS14890	replication protein
*	?	NC_012417	1013 =	3792 (0.370)	1068 (0.100)	42/138	NT	20.4%	coding (182/192 nt)	USA300HOU_RS15665	hypothetical protein

Only 100 of 18602 total aligned reads displayed.

TGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCA  >  NC_012417/897‑1076

tGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTA                                                                                           >  1:3209791‑M1/1‑91 (MQ=255)

 atatgttgcgtttgtcttatttgtgtgacactacatacagaatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaa                                                                                          >  2:3390717‑M1/90‑91 (MQ=255)

   atattgcgtttgtcttatttttgtgacactacatacagcatatgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaAAGa                                                                                        <  1:3359028‑M1/4‑1 (MQ=255)

   aaGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGA                                                                                        >  2:186750‑M1/1‑91 (MQ=255)

    aGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                       <  1:3622665‑M1/91‑1 (MQ=255)

    aGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                       >  2:3029729‑M1/1‑91 (MQ=255)

    aGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                       <  1:1705147‑M1/91‑1 (MQ=255)

    aGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                       >  2:800132‑M1/1‑91 (MQ=255)

     gTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACA                                                                                      >  2:866777‑M1/1‑91 (MQ=255)

     gTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACA                                                                                      <  1:1217580‑M1/91‑1 (MQ=255)

      ttgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaAAGACAt                                                                                     >  1:1564214‑M1/85‑91 (MQ=255)

      tgatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                     <  1:1928177‑M1/91‑1 (MQ=255)

      tgatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                     >  2:2286005‑M1/1‑91 (MQ=255)

       tgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaAAGACAtt                                                                                    <  1:413881‑M1/8‑1 (MQ=255)

       tgcgtttgtcttatttttgtgacactacatacagcatttgccacaaaaataagacagtacttttttataaaaaatcaacaaaaAAGACAtt                                                                                    >  2:2075089‑M1/84‑91 (MQ=255)

       gatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                    <  2:1448136‑M1/91‑1 (MQ=255)

       gatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                    <  1:2198389‑M1/91‑1 (MQ=255)

       gatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                    <  1:1353437‑M1/91‑1 (MQ=255)

       gatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                    <  2:516054‑M1/91‑1 (MQ=255)

         cgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaAAGACATTAg                                                                                  <  2:2559200‑M1/10‑1 (MQ=255)

         cgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaAAGACATTAg                                                                                  <  1:7738‑M1/10‑1 (MQ=255)

          gtttgtcttctttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaAAGACATTAgt                                                                                 >  1:3480824‑M1/81‑91 (MQ=255)

          gaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGT                                                                                 >  2:3107119‑M1/1‑91 (MQ=255)

          gaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGT                                                                                 >  1:3766979‑M1/1‑91 (MQ=255)

            aGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAgtgt                                                                               >  2:1727057/1‑91 (MQ=255)

            aGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAgtgt                                                                               >  2:3171614/1‑91 (MQ=255)

              aTAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTg                                                                             <  2:1513748/91‑1 (MQ=255)

               tAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTcaaca                                                                            <  2:573116‑M1/91‑6 (MQ=255)

                aaaaCAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGac                                                                           >  2:24957‑M2/1‑89 (MQ=255)

                 aaaCAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGact                                                                          <  1:704383‑M2/91‑4 (MQ=255)

                 aaaCAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGact                                                                          >  1:2140552‑M2/1‑88 (MQ=255)

                  aacaacAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTcaacacta                                                                         <  2:717953‑M1/91‑9 (MQ=255)

                  aacaacAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGacta                                                                         >  1:2351879‑M2/1‑87 (MQ=255)

                  aacaacAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGacta                                                                         >  2:137766‑M2/1‑87 (MQ=255)

                  aacaacAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGacta                                                                         <  1:1000014‑M2/91‑5 (MQ=255)

                    caacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGactaat                                                                       >  2:382182‑M2/1‑85 (MQ=255)

                    caacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGactaat                                                                       >  1:1418879‑M2/1‑85 (MQ=255)

                     ttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaAAGACATTAGTGTTGACTAATg                                                                      >  1:977871‑M1/70‑91 (MQ=255)

                     ttttgggacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaAAGACATTAGTGTTGACTAATg                                                                      >  2:2357050‑M1/70‑91 (MQ=255)

                     aacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGAAAAATTATTATTTA                                                                                           <  2:2699846‑M1/70‑1 (MQ=255)

                      acaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGactaatgt                                                                     >  1:2726621‑M2/1‑83 (MQ=255)

                       ttgtgacactacatacagcatttgtcacaaagataagacagtactgttttataaaaaatcaacaaaaAAGACATTAGTGTTGACTAATGTc                                                                    >  2:3312019‑M1/68‑91 (MQ=255)

                       caGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGactaatgtc                                                                    <  1:3836982‑M2/91‑10 (MQ=255)

                        aGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGactaatgtct                                                                   >  2:2895741‑M2/1‑81 (MQ=255)

                        aGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGactaatgtct                                                                   >  1:3416923‑M2/1‑81 (MQ=255)

                        aGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGactaatgtct                                                                   >  2:937294‑M2/1‑81 (MQ=255)

                         gACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGactaatgtctt                                                                  <  1:3132705‑M2/91‑12 (MQ=255)

                           cGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttt                                                                >  1:2066940/1‑91 (MQ=255)

                           cGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttt                                                                >  2:455312/1‑91 (MQ=255)

                            gaagaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCttttt                                                               <  2:2762734/91‑1 (MQ=255)

                             aagaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttttt                                                              <  2:1051343/91‑1 (MQ=255)

                              agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttg                                                             <  2:1246510/91‑1 (MQ=255)

                              agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttg                                                             <  2:2427090/91‑1 (MQ=255)

                               gaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttgt                                                            <  1:616849/91‑1 (MQ=255)

                                 agaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttgttg                                                          <  2:2633356/91‑1 (MQ=255)

                                  gaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGa                                                         >  2:3463906/1‑91 (MQ=255)

                                   aaaaaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAt                                                        >  2:221613/1‑91 (MQ=255)

                                      aaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAtttt                                                     >  1:2997315/1‑91 (MQ=255)

                                       aGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAttttt                                                    <  1:1143712/91‑1 (MQ=255)

                                         cacaTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTta                                                  >  1:54756/1‑91 (MQ=255)

                                          acaTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtat                                                 <  2:2148820/91‑1 (MQ=255)

                                           caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtata                                                >  1:2646159/1‑91 (MQ=255)

                                           caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtata                                                >  2:1308609/1‑91 (MQ=255)

                                             ttCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaaa                                              <  2:1113184/91‑1 (MQ=255)

                                             ttCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaaa                                              <  1:3690738/91‑1 (MQ=255)

                                              tCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaaaa                                             >  2:1176821/1‑91 (MQ=255)

                                               cAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaaaaa                                            <  2:3747842/91‑1 (MQ=255)

                                                     ccGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACT                                      >  2:2828257‑M1/1‑91 (MQ=255)

                                                     ccGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACT                                      >  2:3238246‑M1/1‑91 (MQ=255)

                                                       gCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGT                                    <  1:2425761‑M1/91‑1 (MQ=255)

                                                       gCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGT                                    <  1:2928823‑M1/91‑1 (MQ=255)

                                                       gCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGT                                    <  1:905271‑M1/91‑1 (MQ=255)

                                                         aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                  <  1:2507690‑M1/91‑1 (MQ=255)

                                                         aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                  >  1:227450‑M1/1‑91 (MQ=255)

                                                         aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                  <  1:1997661‑M1/91‑1 (MQ=255)

                                                         aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                  <  2:649711‑M1/91‑1 (MQ=255)

                                                         aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                  >  1:286264‑M1/1‑91 (MQ=255)

                                                            ttGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAT                               <  1:3283154‑M1/91‑1 (MQ=255)

                                                             tGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTATTTATAAAAAAGTACTGTCTTATT                              >  2:3609938‑M1/1‑91 (MQ=255)

                                                                 aTTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTG                          <  1:1084531‑M1/91‑1 (MQ=255)

                                                                 aTTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTG                          >  1:2797734‑M1/1‑91 (MQ=255)

                                                                  tttCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGT                         >  2:3675790‑M1/1‑91 (MQ=255)

                                                                  tttCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGT                         <  2:1938983‑M1/91‑1 (MQ=255)

                                                                   ttCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTG                        <  1:840398‑M1/91‑1 (MQ=255)

                                                                    tCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGA                       <  1:1492340‑M1/91‑1 (MQ=255)

                                                                     cGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                      <  2:39012‑M1/91‑1 (MQ=255)

                                                                        aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                   >  1:3553355/1‑91 (MQ=255)

                                                                        aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                   <  1:1780357/91‑1 (MQ=255)

                                                                           gCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGc                <  2:1798509/91‑1 (MQ=255)

                                                                           aaaaaatcaacaaaaAAGACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGc                <  1:1289995‑M1/76‑1 (MQ=255)

                                                                            cAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCt               >  2:1656944/1‑91 (MQ=255)

                                                                            cAAAATTATTAGTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAATAAAGTACTGTCTTATTTTTGTGACAAATGCt               <  2:2962287/91‑1 (MQ=255)

                                                                             aaaaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtg              <  1:3062204/91‑1 (MQ=255)

                                                                             aaaaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtg              <  2:3534505/91‑1 (MQ=255)

                                                                              aaattATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgt             <  1:1853303‑M2/86‑1 (MQ=255)

                                                                              aaattATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgt             >  1:481948‑M2/6‑91 (MQ=255)

                                                                                attattattTAAGACATTAGTGTTGactaacgtcttaaataatactcttgcttttcgaaattccacattgcggtaattgcatgtgcctttt           <  2:2003729‑M2/91‑67 (MQ=255)

                                                                                    ttattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAg       >  1:2575628/1‑91 (MQ=255)

                                                                                      attTAAGACATTAGTcaacactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaatgtgctttttcttctt     >  2:1582969‑M1/1‑15 (MQ=255)

                                                                                         tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcatttgtca  <  1:1634247‑M1/91‑20 (MQ=255)

TGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCA  >  NC_012417/897‑1076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.