BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	987 =	5283 (0.440)	1068 (0.100)	42/138	NT	20.4%	pseudogene (708/709 nt)	USA300HOU_RS14890	replication protein
*	?	NC_012417	1013 =	3792 (0.370)	1068 (0.100)	42/138	NT	20.4%	coding (182/192 nt)	USA300HOU_RS15665	hypothetical protein

Only 100 of 14721 total aligned reads displayed.

ACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTG  >  NC_012417/923‑1103

aCGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCttt                                                                                            >  2:1037371/1‑91 (MQ=255)

 cGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttt                                                                                           >  2:463394/1‑91 (MQ=255)

  gaagaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCttttt                                                                                          <  1:3756928/91‑1 (MQ=255)

   aagaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttttt                                                                                         <  1:2195630/91‑1 (MQ=255)

   aagaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttttt                                                                                         >  1:3281117/1‑91 (MQ=255)

    agaagaaATAGCACAATCAATTACCGCAACTTCTGTTGTTGGATGGATAAATTATTATTTAAGACATTAGTGTTGACTATTGACTTTTttg                                                                                        <  2:2352048/91‑1 (MQ=12)

    agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttg                                                                                        >  2:289978/1‑91 (MQ=255)

    agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttg                                                                                        <  2:3616901/91‑1 (MQ=255)

      aagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttgtt                                                                                      >  1:15027/1‑91 (MQ=255)

        gaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGa                                                                                    >  1:1000400/1‑91 (MQ=255)

        gaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGa                                                                                    >  2:3756739/1‑91 (MQ=255)

             aGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAttttt                                                                               >  1:3822395/1‑91 (MQ=255)

              gCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAtttttt                                                                              >  1:466910/1‑91 (MQ=255)

               cacaTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTta                                                                             <  2:585856/91‑1 (MQ=255)

                acaTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtat                                                                            <  1:1634181/91‑1 (MQ=255)

                 caTTCAATTACTGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtata                                                                           >  1:2268459/1‑91 (MQ=255)

                 caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtata                                                                           <  1:2051180/91‑1 (MQ=255)

                 caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtata                                                                           >  1:537152/1‑91 (MQ=255)

                 caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtata                                                                           >  1:2551980/1‑91 (MQ=255)

                   ttCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaaa                                                                         >  2:2287540/1‑91 (MQ=255)

                    tCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaaaa                                                                        >  2:1375058/1‑91 (MQ=255)

                    tCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaaaa                                                                        <  2:1936722/91‑1 (MQ=255)

                    tCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaaaa                                                                        >  1:969967/1‑91 (MQ=255)

                    tCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaaaa                                                                        >  1:2626772/1‑91 (MQ=255)

                     cAATTACCGCAATTTGGTATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaaaaa                                                                       <  1:889752/91‑1 (MQ=255)

                       aTTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAG                                                                     >  2:1095968‑M1/1‑91 (MQ=255)

                         tACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTA                                                                   >  2:650080‑M1/1‑91 (MQ=255)

                           ccGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACT                                                                 >  1:3481033‑M1/1‑91 (MQ=255)

                           ccGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACT                                                                 >  1:198317‑M1/1‑91 (MQ=255)

                            cGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTGCTG                                                                >  1:3057047‑M1/1‑91 (MQ=255)

                             gCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGT                                                               >  2:2623955‑M1/1‑91 (MQ=255)

                               aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                                             >  2:3112161‑M1/1‑91 (MQ=255)

                               aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                                             <  2:1659380‑M1/91‑1 (MQ=255)

                               aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                                             <  1:605414‑M1/91‑1 (MQ=255)

                               aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                                             <  1:1427122‑M1/91‑1 (MQ=255)

                               aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                                             <  2:2558198‑M1/91‑1 (MQ=255)

                               aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTGTTATAAAAAAGTACTGTCT                                                             <  2:3397652‑M1/91‑1 (MQ=255)

                                  ttGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAT                                                          <  2:795600‑M1/91‑1 (MQ=255)

                                  ttGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAT                                                          <  1:1842903‑M1/91‑1 (MQ=255)

                                    ggAATTTCGAAAAGCAAAATTATTATTTAAGACGTTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTT                                                        >  2:158167‑M1/1‑91 (MQ=255)

                                     gAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTT                                                       >  2:1508811‑M1/1‑91 (MQ=255)

                                     gAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTT                                                       >  2:720473‑M1/1‑91 (MQ=255)

                                       aTTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTG                                                     <  2:2974320‑M1/91‑1 (MQ=255)

                                             aaaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaa                                               <  2:3042876/91‑1 (MQ=255)

                                              aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                              >  2:3536144/1‑91 (MQ=255)

                                              aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                              <  1:1084255/91‑1 (MQ=255)

                                              aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                              >  2:214827/1‑91 (MQ=255)

                                              aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                              <  1:685546/91‑1 (MQ=255)

                                              aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                              >  1:2126951/1‑91 (MQ=255)

                                              aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                 >  2:2490846‑M1/1‑88 (MQ=255)

                                               ataaaaaatcaacaaaaAAGACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAAt                                             <  2:3176115‑M1/74‑1 (MQ=255)

                                                aGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATg                                            <  2:1862568/91‑1 (MQ=255)

                                                  cAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCt                                          <  2:865565/91‑1 (MQ=255)

                                                   aaaaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtg                                         >  1:2847451/1‑91 (MQ=255)

                                                    aaattATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgt                                        <  1:2331280‑M2/86‑1 (MQ=255)

                                                     aattATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgta                                       >  2:2000956‑M2/5‑91 (MQ=255)

                                                      attATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtat                                      >  1:1294315‑M2/4‑91 (MQ=255)

                                                       ttATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatg                                     <  2:144693‑M2/89‑1 (MQ=255)

                                                         aacaaaaAAGACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatgta                                   <  1:1771747‑M1/84‑1 (MQ=255)

                                                           tATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGt                                 >  2:2700891‑M2/1‑90 (MQ=255)

                                                            attTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcatttg                                <  1:3414886‑M1/91‑17 (MQ=255)

                                                            aTTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtg                                <  2:937071‑M2/91‑3 (MQ=255)

                                                             tttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgt                               <  1:2478864‑M2/91‑4 (MQ=255)

                                                             tttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgt                               <  1:2787230‑M2/91‑4 (MQ=255)

                                                             tttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTATTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacaacatttgt                               <  2:1310147‑M1/91‑18 (MQ=255)

                                                              ttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtc                              <  1:1902189‑M2/91‑5 (MQ=255)

                                                              ttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtc                              <  1:1218726‑M2/91‑5 (MQ=255)

                                                               tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                             <  1:2911500‑M2/91‑6 (MQ=255)

                                                               tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                             >  1:3684788‑M2/1‑86 (MQ=255)

                                                                aaGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtaac                            >  2:2836080‑M2/1‑85 (MQ=255)

                                                                 aGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcatttgtcaca                           <  2:1793593‑M1/91‑22 (MQ=255)

                                                                 aGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcaca                           >  1:760932‑M2/1‑84 (MQ=255)

                                                                  gacattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGCCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaa                          >  2:1235051‑M2/25‑91 (MQ=255)

                                                                  gACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcatttgtcacaa                          <  1:297920‑M1/91‑23 (MQ=255)

                                                                   acattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACcaa                         >  2:1162069‑M2/24‑91 (MQ=255)

                                                                   acattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaa                         >  1:1695433‑M2/24‑91 (MQ=255)

                                                                   acattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGCATGTCGTGTCACaaa                         >  2:2422841‑M2/24‑91 (MQ=255)

                                                                    cattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaa                        >  2:397912‑M2/23‑91 (MQ=255)

                                                                    cATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaa                        >  1:2412999‑M2/1‑81 (MQ=255)

                                                                      ttAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaat                      <  1:3552840‑M2/91‑13 (MQ=255)

                                                                      ttAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaat                      <  1:398887‑M2/91‑13 (MQ=255)

                                                                         gtgtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataag                   >  1:1574198‑M2/1‑76 (MQ=255)

                                                                          tgtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataaga                  >  2:3829003‑M2/1‑75 (MQ=255)

                                                                           gtTGACTAATGTCTTTTTTGTTTATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagac                 >  2:3321069‑M2/1‑74 (MQ=255)

                                                                           gtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagac                 <  2:525347‑M2/91‑18 (MQ=255)

                                                                             tGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaa               <  2:1722317/91‑1 (MQ=255)

                                                                                ctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg            <  1:1358500‑M2/81‑1 (MQ=255)

                                                                                ctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg            <  1:823839‑M2/81‑1 (MQ=255)

                                                                                  aatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGGCAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa          >  2:2075089‑M2/9‑91 (MQ=255)

                                                                                  aatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa          <  1:3619820‑M2/83‑1 (MQ=255)

                                                                                  aaggtcttTTTTGTTGATTTATTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa          <  2:3469991‑M2/83‑1 (MQ=255)

                                                                                   atgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCaa         <  2:2214426‑M2/84‑1 (MQ=255)

                                                                                    tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat        >  2:3239937‑M2/7‑91 (MQ=255)

                                                                                    tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat        <  1:3128974‑M2/85‑1 (MQ=255)

                                                                                     gtcttTTTTTTTTTTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACATATGCTGTATGTAGTGTCTCAAAAATATGACAAACGCAata       >  2:3678685‑M2/6‑91 (MQ=255)

                                                                                      tcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAGATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat      <  1:3358898‑M2/87‑1 (MQ=255)

                                                                                      tcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat      <  1:3207942‑M2/87‑1 (MQ=255)

                                                                                        ttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACATAAATAAGACAAACGCAatatat    >  2:2769562‑M2/3‑91 (MQ=255)

                                                                                        ttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatatat    >  1:2703214‑M2/3‑91 (MQ=255)

                                                                                         tTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATAtt   >  1:1145843‑M2/2‑91 (MQ=255)

ACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTG  >  NC_012417/923‑1103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.