| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012417 | = 1057 | 1423 (0.120) | 488 (0.050) | 49/124 | NT | 24.1% | coding (138/192 nt) | USA300HOU_RS15665 | hypothetical protein |
| ? | NC_012417 | = 1071 | 1977 (0.210) | coding (124/192 nt) | USA300HOU_RS15665 | hypothetical protein | |||||
Only 100 of 19359 total aligned reads displayed.
GAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTA > NC_012417/967‑1147 | ggttttaaggtattttaaagtgatatcatacaaagctgtactgtcttatttttgtgacacaatatattgcgttTGTCTTATTTTTGTGACa > 2:3394917‑M1/74‑91 (MQ=255) aaaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaa < 1:239336/91‑1 (MQ=255) aaaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaa < 1:2546637/91‑1 (MQ=255) aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa < 2:2789846/91‑1 (MQ=255) aaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAAt > 2:70270/1‑91 (MQ=255) aGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATg > 1:2467885/1‑91 (MQ=255) gCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGc > 1:2775743/1‑91 (MQ=255) cAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATgtt > 2:184800/1‑89 (MQ=255) cAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCt > 2:2931202/1‑91 (MQ=255) aaattATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgt < 2:1279139‑M2/86‑1 (MQ=255) aattATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTTTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgta > 2:3687800‑M2/5‑91 (MQ=255) aattATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgta < 1:983707‑M2/87‑1 (MQ=255) tATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatgt < 1:3822158‑M2/90‑1 (MQ=255) ttattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATATAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAg > 2:495133/1‑91 (MQ=255) ttattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAg < 1:3298358/91‑1 (MQ=255) attTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcatttg < 2:628156‑M1/91‑17 (MQ=255) tttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgt > 2:3184462‑M2/1‑88 (MQ=255) tttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgt > 1:919312‑M2/1‑88 (MQ=255) aggggatatcatacaaggctgtactgtcttatatttgtgacacaatatattgcgttTGTCTTATTTTTGTGACAAATGCTGTATGTTgtgt > 1:1072369‑M1/57‑91 (MQ=255) ttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtc > 1:2951178‑M2/1‑87 (MQ=255) tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca > 2:33307‑M2/1‑86 (MQ=255) gtgatatcatacaaagctgtactgtcttatttttgtgacacaatatattgcgttTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTca > 2:1401535‑M1/55‑91 (MQ=255) gatatcatacaaagctgtactgtcttatttttgtgacacaatatattgcgttTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcaca > 1:1523417‑M1/53‑91 (MQ=255) agacattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcaca > 1:2693011‑M2/26‑91 (MQ=255) gacattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaa > 1:1141382‑M2/25‑91 (MQ=255) gACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaa < 1:1455880‑M2/91‑9 (MQ=255) acattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaa > 1:3493011‑M2/24‑91 (MQ=255) aCATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcatttgtcacaaa < 1:3758822‑M1/91‑24 (MQ=255) aTTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaa > 1:1771798‑M2/1‑80 (MQ=255) ttagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAACTACTATCTTATTTATGTGACAAATGCTGTATTTACTGTCACAAAAAt > 2:2518676‑M2/21‑91 (MQ=255) gtgtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataag > 2:1202547‑M2/1‑76 (MQ=255) tgtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataaga > 2:1786554‑M2/1‑75 (MQ=255) gACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaaa > 2:768467/1‑91 (MQ=255) aaTGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaata < 1:1979745‑M2/80‑14 (MQ=255) atgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCaa > 1:2044129‑M2/8‑91 (MQ=255) tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat < 1:2890504‑M2/85‑1 (MQ=255) tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat < 1:727581‑M2/85‑1 (MQ=255) gtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAata < 2:1467784‑M2/86‑1 (MQ=255) ttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatatat > 1:464775‑M2/3‑91 (MQ=255) tTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATAtt > 1:2253661‑M2/2‑91 (MQ=255) ttgATTTTTTATAAAAAAGTACTGGCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca > 2:3618390‑M2/1‑86 (MQ=255) gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca > 1:1648789‑M2/1‑84 (MQ=255) aTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaa < 1:1383248‑M1/91‑55 (MQ=255) aTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacca < 2:3769434‑M2/91‑9 (MQ=255) aTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaa < 2:170770‑M2/91‑9 (MQ=255) ttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaa > 2:13378‑M2/1‑80 (MQ=255) ttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaata < 2:2863715‑M2/91‑14 (MQ=255) ttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaata < 1:3424115‑M2/91‑14 (MQ=255) tataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGCCAAACGCAATATATTGtgtcacaaaaataa < 1:1210315‑M2/91‑15 (MQ=255) tataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataa < 2:2127317‑M2/91‑15 (MQ=255) taAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataaga < 1:1326546‑M2/91‑17 (MQ=255) aaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacag > 2:2039524‑M2/1‑72 (MQ=255) aaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacag > 2:425953‑M2/1‑72 (MQ=255) aaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagt < 1:3627106‑M2/91‑21 (MQ=255) gTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACa < 2:2363692/91‑1 (MQ=255) tACTGTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtactt > 2:841361‑M1/1‑21 (MQ=255) tACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg > 1:1910891/1‑91 (MQ=255) tACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg > 2:556516/1‑91 (MQ=255) aCTGTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttt < 1:3235‑M1/91‑72 (MQ=255) aCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGc > 2:2285691/1‑91 (MQ=255) cTGTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtactttt > 2:2637798‑M1/1‑19 (MQ=255) cTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt > 1:2620227/1‑91 (MQ=255) tGTCTTATTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaa < 1:2186431‑M1/91‑74 (MQ=255) tGTCTTATTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaa < 2:1907350‑M1/91‑74 (MQ=255) gTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtactttttt < 2:2713720‑M1/91‑75 (MQ=255) gTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtactttttt < 1:854243‑M1/91‑75 (MQ=255) gTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtactttttt < 1:3690217‑M1/91‑75 (MQ=255) GTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCttt > 1:3154170‑M1/1‑91 (MQ=255) cTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttat > 2:3022303‑M1/1‑15 (MQ=255) ttATTTTTGTGACAcaatatcttgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttata < 2:3469367‑M1/91‑78 (MQ=255) tATTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacacta > 2:1121591‑M1/1‑13 (MQ=255) tATTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacacta > 1:792964‑M1/1‑13 (MQ=255) tATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataa < 1:1850764‑M1/91‑79 (MQ=255) TATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTAt < 1:661447‑M1/91‑1 (MQ=255) aTTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaa < 2:3109385‑M1/91‑80 (MQ=255) ATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATg < 1:2117113‑M1/91‑1 (MQ=255) tttttGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaa < 2:3843359‑M1/91‑81 (MQ=255) tttttGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaa < 2:326129‑M1/91‑81 (MQ=255) ttttGTGACAAATGCTGTATGTAGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatg < 1:393541‑M2/91‑68 (MQ=255) tttGTGACAAATGCTGTATGTAGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgt < 1:3555677‑M2/91‑69 (MQ=255) TTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGatat > 2:1057026‑M1/1‑91 (MQ=255) tgtgACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtct > 1:2315455‑M1/1‑7 (MQ=255) tgtgACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtct > 2:923642‑M1/1‑7 (MQ=255) tgtgACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatc < 2:3538100‑M1/91‑85 (MQ=255) TGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc < 1:1279818‑M1/91‑1 (MQ=255) TGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTATGTATGATATc < 1:529747‑M1/91‑1 (MQ=255) gtgACAAATGCTGTATGTAGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtctt < 2:1630281‑M2/91‑72 (MQ=255) GTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCa > 2:2188647‑M1/1‑91 (MQ=255) tgACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtctta < 1:2828248‑M1/91‑87 (MQ=255) TGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAc < 1:1589048‑M1/91‑1 (MQ=255) TGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTATGTATGATATCAc < 2:2571337‑M1/91‑1 (MQ=255) gACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaac < 1:591994‑M1/91‑88 (MQ=255) gACAAATGCTGTATGTAGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaa < 1:1703985‑M2/91‑74 (MQ=255) GACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACt > 1:3362772‑M1/1‑91 (MQ=255) acacaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaaca > 2:1969183‑M1/1‑3 (MQ=255) aCAAATCCTGTATGTAGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtctaaaa < 1:3013455‑M2/91‑75 (MQ=255) ACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACtt < 2:1549846‑M1/91‑1 (MQ=255) cactacatacagcatttgtcacaaaactaagacagtacttttttatcaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaat > 1:3083572‑M1/1‑2 (MQ=255) cacaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaa < 1:1000628‑M1/91‑90 (MQ=255) actacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaata < 2:2443771‑M1/91‑91 (MQ=255) | GAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTA > NC_012417/967‑1147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |