| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 42499 = | 208 (1.090) | 18 (0.120) | 13/124 | NT | 12.3% | coding (1467/1524 nt) | USA300TCH1516_00035 | hypothetical protein |
| ? | USA300TCH1516_ALE | 42544 = | 97 (0.660) | coding (1422/1524 nt) | USA300TCH1516_00035 | hypothetical protein | |||||
Only 100 of 332 total aligned reads displayed.
ACAAGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTT > USA300TCH1516_ALE/42409‑42589 | aCAAGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGa > 1:2273854/1‑91 (MQ=255) cAAGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGaa > 1:2937047/1‑91 (MQ=255) aGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGGGTCCGGGACATAAAGTTCTTGGATAAGTGaaaa > 1:1366832/1‑91 (MQ=255) tcaaaagtgaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttataaaaa > 1:1940304‑M1/87‑91 (MQ=255) tcaaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttataaaaa < 2:3862245‑M1/5‑1 (MQ=255) gTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGaaaaa > 2:2972265/1‑91 (MQ=255) gTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGaaaaa < 1:2656108/91‑1 (MQ=255) gTTGTAGAGCAAGCAGAATTAATGACAAGTAAGAAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGaaaaa < 2:2289410/91‑1 (MQ=255) ttGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGaaaaaa > 2:3290725/1‑91 (MQ=255) ttGTAGAGCAAGCAGAATTAATGGCAAGACAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGaaaaaa < 2:1379896/91‑1 (MQ=255) aaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAg < 2:3581783‑M1/7‑1 (MQ=255) aaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAg < 2:2791503‑M1/7‑1 (MQ=255) aaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAg < 2:3666065‑M1/7‑1 (MQ=255) aaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAg > 2:3680402‑M1/85‑91 (MQ=255) aaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAg < 1:2496226‑M1/7‑1 (MQ=255) aaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAg < 2:1036442‑M1/7‑1 (MQ=255) gTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGa > 2:11116/1‑91 (MQ=255) aaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGa > 1:1479774‑M1/84‑91 (MQ=255) tAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGAc > 2:885917/1‑91 (MQ=255) aagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGAc > 1:534524‑M1/83‑91 (MQ=255) agagCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACa > 2:3035220/1‑91 (MQ=255) gagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACaa < 2:3334404‑M1/11‑1 (MQ=255) gagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACaa > 2:458666‑M1/81‑91 (MQ=255) gagCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACaa > 1:2087212/1‑91 (MQ=255) gagCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACaa > 1:2067376/1‑91 (MQ=255) agaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAAt < 2:3429946‑M1/12‑1 (MQ=255) gaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAAtt < 1:799571‑M1/13‑1 (MQ=255) gaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAAtt < 1:3152345‑M1/13‑1 (MQ=255) acttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTc > 1:2551285‑M1/77‑91 (MQ=255) aagcaGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTc > 1:2430471/1‑91 (MQ=255) aagcaGAATTAACGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAATAGACAATTTc < 1:1128656/91‑1 (MQ=255) cttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAAt > 2:545728‑M1/76‑87 (MQ=255) cttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCt < 1:2212865‑M1/16‑1 (MQ=255) cttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCt > 2:1263149‑M1/76‑91 (MQ=255) agcaGAATTAATGGCAAGTAAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCt < 2:1451466/91‑1 (MQ=255) ttggttttgtattaatggcacttaatagaagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTa > 2:275471‑M1/75‑91 (MQ=255) gcaGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTa > 1:169642/1‑91 (MQ=255) gcaGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTa > 1:99825/1‑91 (MQ=255) caGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAt < 2:2067376/91‑1 (MQ=255) ttAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGGCAATTTATAT‑TGaaa > 2:3367147/1‑91 (MQ=255) ttAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGaaa > 1:3438978/1‑91 (MQ=255) ttAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGaaa > 1:1887881/1‑91 (MQ=255) tAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAaat > 2:639055/1‑91 (MQ=255) tAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAaat > 2:2481763/1‑91 (MQ=255) aTGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAaataa > 1:3027775/1‑91 (MQ=255) aTGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAaataa > 2:2596311/1‑91 (MQ=255) tGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAaataat < 2:3774278/91‑1 (MQ=255) tGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAaataat > 1:3581783/1‑91 (MQ=255) cAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAAtata < 1:1539888/91‑1 (MQ=255) tggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTAT‑TGAAATAATATAGa > 2:3085345‑M1/60‑91 (MQ=255) aGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGa < 1:2899821/91‑1 (MQ=255) gcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTAT‑TGAAATAATATAGaaa > 2:2577142‑M1/58‑91 (MQ=255) cAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAt > 2:1971269/1‑91 (MQ=255) aGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAtt < 1:139937/91‑1 (MQ=255) aGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAtt > 1:3202889/1‑91 (MQ=255) aGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAtt > 1:3407369/1‑91 (MQ=255) cttaatataagaaaagtagtagctcaacaagataaaaaaaaaaaaaaaatttatAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTg > 2:1839832‑M1/55‑91 (MQ=255) ttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGt > 2:3633966‑M1/54‑91 (MQ=255) cAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGt > 1:2577283/1‑91 (MQ=255) aTAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCt > 2:86353/1‑91 (MQ=255) tAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCtt < 1:3337321/91‑1 (MQ=255) tAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCtt < 2:2111491/91‑1 (MQ=255) aaaaaaaTAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCttt < 2:2646973/91‑1 (MQ=255) aaaaaaTAAATCATAATGAGTCCGGGACATAACGTTCTTGGATAAGTGCAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATCGTCtatt > 1:2467686/1‑91 (MQ=255) aaaaaaTAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCtttt > 1:635193/1‑91 (MQ=255) aaaaTAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCtttttt > 2:2736323/1‑91 (MQ=255) aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAGAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTtat > 1:2613324/1‑91 (MQ=255) aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTtat > 1:954190/1‑91 (MQ=255) aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTtat < 1:2312095/91‑1 (MQ=255) tCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAttt > 1:1245680/1‑91 (MQ=255) tCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAttt > 2:1192460/1‑91 (MQ=255) cATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAtttt < 1:1757418/91‑1 (MQ=255) cATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAtttt > 1:1732462/1‑91 (MQ=255) tAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAACGACAATATCTAT‑TGAAATAATATAGACATTGTCTTTTTTATAAAtttttt > 2:3604720/1‑91 (MQ=255) tAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAtttttt < 2:2631097/91‑1 (MQ=255) aaTGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTg < 1:274765/91‑1 (MQ=255) cGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTAtttt < 2:1365567/91‑1 (MQ=255) ggACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCa < 1:2017681/91‑1 (MQ=255) ggACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCa < 1:3850188/91‑1 (MQ=255) gACATAAAGTTCTTGGATGAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAg < 1:1908161/91‑1 (MQ=255) aCATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGc > 1:3751195/1‑91 (MQ=255) aCATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGc > 1:757559/1‑91 (MQ=255) aCATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGc > 1:566310/1‑91 (MQ=255) aaaGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTTTTTTCAGCTCGt < 1:2970883/91‑1 (MQ=255) atcaaaaaatttatAAAAAAGACAATTTCTAT‑ATTATTTCAATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTgat < 2:901931‑M1/77‑2 (MQ=255) cTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGct < 1:3248123/91‑1 (MQ=255) ttGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta < 2:3167885/91‑1 (MQ=255) ttGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta < 1:514847/91‑1 (MQ=255) tGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac > 1:311261/1‑91 (MQ=255) ggATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact > 1:1194750/1‑91 (MQ=255) aTAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCtactac < 2:2867138/91‑1 (MQ=255) aaGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACtt > 2:1704421/1‑91 (MQ=255) aGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACttt < 1:2829879/91‑1 (MQ=255) tGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTc > 1:269588/1‑91 (MQ=255) tAAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCt < 2:721301‑M1/90‑1 (MQ=255) gAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCt < 1:971306/91‑1 (MQ=255) AAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt > 2:1612145‑M1/1‑91 (MQ=255) AAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt > 2:40625‑M1/1‑91 (MQ=255) AAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt < 1:3636530‑M1/91‑1 (MQ=255) AAAAAAGACAATTTCTAT‑ATTATTTCAATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt < 2:2367103‑M1/91‑1 (MQ=255) | ACAAGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTT > USA300TCH1516_ALE/42409‑42589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |