BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	42499 =	208 (1.090)	18 (0.120)	13/124	NT	12.3%	coding (1467/1524 nt)	USA300TCH1516_00035	hypothetical protein
*	?	USA300TCH1516_ALE	42544 =	97 (0.660)	18 (0.120)	13/124	NT	12.3%	coding (1422/1524 nt)	USA300TCH1516_00035	hypothetical protein

Only 100 of 278 total aligned reads displayed.

AAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTA  >  USA300TCH1516_ALE/42454‑42634

 aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAGAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTtat                                                                                           >  1:2613324/1‑91 (MQ=255)

 aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGGAATTGTCTTTTTtat                                                                                           <  1:2584588/91‑1 (MQ=255)

 aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTtat                                                                                           >  1:3664126/1‑91 (MQ=255)

 aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTtat                                                                                           <  1:2312095/91‑1 (MQ=255)

 aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTtat                                                                                           >  2:3868609/1‑91 (MQ=255)

  ataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTtata                                                                                          <  2:20299/91‑1 (MQ=255)

  ataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTtata                                                                                          <  1:2520842/91‑1 (MQ=255)

      atCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAtt                                                                                      <  1:1383686/91‑1 (MQ=255)

       tCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAttt                                                                                     >  1:1245680/1‑91 (MQ=255)

       tCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAttt                                                                                     <  1:1430699/91‑1 (MQ=255)

        cATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAtttt                                                                                    >  1:1732462/1‑91 (MQ=255)

        cATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAtttt                                                                                    <  1:1756767/91‑1 (MQ=255)

          tAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAACGACAATATCTAT‑TGAAATAATATAGACATTGTCTTTTTTATAAAtttttt                                                                                  >  2:3604720/1‑91 (MQ=255)

          tAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAtttttt                                                                                  <  1:971220/91‑1 (MQ=255)

           aaTGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTg                                                                                 <  1:274765/91‑1 (MQ=255)

            agctcaacgagctgaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaattgtcttttttATAAATTTTTTg                                                                                 <  1:910921‑M2/12‑1 (MQ=255)

              gAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGatt                                                                              >  2:1739818/1‑91 (MQ=255)

               aGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGatta                                                                             >  2:3248123/1‑91 (MQ=255)

                 tCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGattatt                                                                           <  2:2565940/91‑1 (MQ=255)

                   cGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTAtttt                                                                         <  2:2635533/91‑1 (MQ=255)

                   cGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTAtttt                                                                         <  2:1365567/91‑1 (MQ=255)

                    gggACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTc                                                                        >  1:632724/1‑91 (MQ=255)

                      gACATAAAGTTGTTGGATAAGTGTAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAg                                                                      <  2:2960342/91‑1 (MQ=255)

                      gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAg                                                                      <  1:3418747/91‑1 (MQ=255)

                       aCATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGc                                                                     >  1:566310/1‑91 (MQ=255)

                         aTAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTc                                                                   >  2:889732/1‑91 (MQ=255)

                         aTAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTc                                                                   >  2:2641086/1‑91 (MQ=255)

                           aaaGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTTTTTTCAGCTCGt                                                                 <  1:2970883/91‑1 (MQ=255)

                             aGTGCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTg                                                               <  1:2020354/91‑1 (MQ=255)

                               ttCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAg                                                             <  2:3664126/91‑1 (MQ=255)

                               ttCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAg                                                             <  1:3868609/91‑1 (MQ=255)

                               atcaaaaaatttatAAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAg                                                             <  1:3842126‑M1/77‑1 (MQ=255)

                                  ttGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta                                                          <  2:3167885/91‑1 (MQ=255)

                                  ttGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta                                                          >  1:1185547/1‑91 (MQ=255)

                                  ttGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta                                                          <  1:515219/91‑1 (MQ=255)

                                  ttGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta                                                          <  2:276906/91‑1 (MQ=255)

                                   tGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac                                                         <  2:2087212/91‑1 (MQ=255)

                                   tGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac                                                         >  1:311261/1‑91 (MQ=255)

                                    ggATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact                                                        <  2:902150/91‑1 (MQ=255)

                                    ggATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact                                                        >  1:2689683/1‑91 (MQ=255)

                                     gATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctacta                                                       >  2:3732862/1‑91 (MQ=255)

                                      aTAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCtactac                                                      <  2:2867138/91‑1 (MQ=255)

                                         aGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACttt                                                   <  1:2829879/91‑1 (MQ=255)

                                         aGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACttt                                                   <  1:2481763/91‑1 (MQ=255)

                                          ttataaaaaagacaatttctatattatttcaatagaaattgtcgtttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACttt                                                   >  1:3244762‑M2/50‑91 (MQ=255)

                                           tGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTc                                                 >  2:3643029/1‑91 (MQ=255)

                                            tAAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCt                                                <  1:536768‑M1/90‑1 (MQ=255)

                                            tAAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCt                                                <  2:721301‑M1/90‑1 (MQ=255)

                                            gAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCt                                                <  1:3086352/91‑1 (MQ=255)

                                             taaaaaagacaatttctatattatttcaatagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTTAGCTACTACTTTTCt                                                >  2:721437‑M2/47‑91 (MQ=255)

                                             AAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt                                               <  1:987965‑M1/91‑1 (MQ=255)

                                             AAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt                                               >  2:1492263‑M1/1‑91 (MQ=255)

                                             AAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt                                               >  2:808076‑M1/1‑91 (MQ=255)

                                             AAAAAAGACAATTTCTAT‑ATTATTTCAATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt                                               <  2:2367103‑M1/91‑1 (MQ=255)

                                              AAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTta                                              <  2:3407018‑M1/91‑1 (MQ=255)

                                                AAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtata                                            >  2:2621580‑M1/1‑91 (MQ=255)

                                                AAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtata                                            >  1:885878‑M1/1‑91 (MQ=255)

                                                  AGACAAGTTCTAT‑TCAAATAATATAGAAATTGTCTTTTTTATCAATTTTT‑GAGGATTTTCAGCACGTTGAGCTACTACTCTTCTTATATTa                                         <  2:963537‑M1/91‑1 (MQ=255)

                                                   GACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTa                                         <  2:1626922‑M1/91‑1 (MQ=255)

                                                   GACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTa                                         <  2:1700502‑M1/91‑1 (MQ=255)

                                                   GACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTa                                         <  1:545900‑M1/91‑1 (MQ=255)

                                                     CAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAg                                       >  2:2174831‑M1/1‑91 (MQ=255)

                                                     CAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAg                                       >  1:3290725‑M1/1‑91 (MQ=255)

                                                     CAACTTCTAT‑TGAAATAATATAGAAATTGTCTTATTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTTCTTTTCTTATATTAAg                                       <  2:86030‑M1/91‑1 (MQ=255)

                                                         tttctatattatttcaatagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGc                                    >  2:1936041‑M2/35‑91 (MQ=255)

                                                         tttctatattatttcaatagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGc                                    >  2:2577156‑M2/35‑91 (MQ=255)

                                                           CTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCAt                                 <  1:2187671‑M1/91‑1 (MQ=255)

                                                             tatattatttcaatagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCAtt                                >  2:1858952‑M2/31‑91 (MQ=255)

                                                             AT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGCGCTACTACTTTTCTTATATTAAGTGCCATTa                               <  1:3850287‑M1/91‑1 (MQ=255)

                                                             AT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTa                               <  2:3368304‑M1/91‑1 (MQ=255)

                                                                 gAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATa                            <  1:732735/91‑1 (MQ=255)

                                                                   aataatATAGAAATTGTCTTTTTTATAAATTTTTTGAATATTTTCAGCTCGATGAGCTACTACTTTTCTTATATTAAGTGCCATTGATACa                          >  1:3610638/1‑91 (MQ=255)

                                                                     ttcaatagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACaaa                        >  2:3074117‑M2/23‑91 (MQ=255)

                                                                     taataTAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACaaa                        >  1:3334482/1‑91 (MQ=255)

                                                                        tataGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAAcc                     >  2:3505508/1‑91 (MQ=255)

                                                                        tataGAAATGGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAAcc                     <  1:3713506/91‑1 (MQ=255)

                                                                         atagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCa                    <  2:416997‑M2/73‑1 (MQ=255)

                                                                           agaaattgtcttttttATAAATTTTTTTATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                  >  2:525681‑M2/17‑91 (MQ=255)

                                                                           agaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                  >  2:1143913‑M2/17‑91 (MQ=255)

                                                                           agaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                  >  2:3432069‑M2/17‑91 (MQ=255)

                                                                           agaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                  >  1:1937467‑M2/17‑91 (MQ=255)

                                                                           agaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                  <  1:316390‑M2/75‑1 (MQ=255)

                                                                           agaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                  <  1:2212865‑M2/75‑1 (MQ=255)

                                                                           agaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                  >  2:3832672‑M2/17‑91 (MQ=255)

                                                                           agaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                  >  2:1263370‑M2/17‑91 (MQ=255)

                                                                            gaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGt                 <  1:860316‑M2/76‑1 (MQ=255)

                                                                                ttgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTtctc             <  2:3334404‑M2/80‑1 (MQ=255)

                                                                                 tgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTctct            <  1:1902144‑M2/81‑1 (MQ=255)

                                                                                   tcttttttATTTTTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCttt          >  2:333008‑M2/9‑91 (MQ=255)

                                                                                   tcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCttt          <  1:2930647‑M2/83‑1 (MQ=255)

                                                                                   tcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCttt          >  1:2001330‑M2/9‑91 (MQ=255)

                                                                                    cttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTtc               >  1:2122534‑M2/8‑85 (MQ=255)

                                                                                    cttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt         <  2:632724‑M2/84‑1 (MQ=255)

                                                                                     ttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTg        <  2:1577481‑M2/85‑1 (MQ=255)

                                                                                      tttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGa       <  2:2701689‑M2/86‑1 (MQ=255)

                                                                                      tttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGa       <  2:1194750‑M2/86‑1 (MQ=255)

                                                                                       ttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGAc      <  1:793520‑M2/87‑1 (MQ=255)

                                                                                         ttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACtt    <  2:3670495‑M2/89‑1 (MQ=255)

                                                                                           ataAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTa  <  1:1626937/91‑1 (MQ=255)

                                                                                           ataAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTa  <  1:1626837/91‑1 (MQ=255)

AAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTA  >  USA300TCH1516_ALE/42454‑42634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.