BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	181969 =	199 (1.040)	16 (0.090)	10/150	NT	8.1%	coding (32/1110 nt)	glgA	Glycogen synthase
*	?	USA300TCH1516_ALE	181998 =	178 (1.000)	16 (0.090)	10/150	NT	8.1%	coding (61/1110 nt)	glgA	Glycogen synthase

Only 100 of 260 total aligned reads displayed.

GCCTGACAAACTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGC  >  USA300TCH1516_ALE/181879‑182059

gCCTGACAAACTAAAAGGATTTTCGGTTGAATCTTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAatat                                                                                             >  2:3801993/1‑91 (MQ=255)

gCCTGACAAACTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAatat                                                                                             <  2:2472802/91‑1 (MQ=255)

gCCTGACAAACTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAatat                                                                                             <  2:3758239/91‑1 (MQ=255)

gCCTGACAAACTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAatat                                                                                             >  2:1832039/1‑91 (MQ=255)

atctaaattttccaatcgcttattagtagcttgtgaattattcattccaacaattttataatcatccgtaacgcctttaattgtttctatt                                                                                             >  2:2789231‑M1/91‑91 (MQ=255)

 tctaaattttccaatcgcttattagtagcttgtgaattattcattccaacaatttcataatcatccgtaacgcctttaattgtttctattt                                                                                            <  1:1811449‑M1/2‑1 (MQ=255)

 ccTGACAAACTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATAtt                                                                                            >  1:1287658/1‑91 (MQ=255)

 ccTGACAAACTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATAtt                                                                                            <  2:1927850/91‑1 (MQ=255)

 ccTGACAAACTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATAtt                                                                                            >  2:1038982/1‑91 (MQ=255)

 ccTGACAAACTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATAtt                                                                                            <  2:2330369/91‑1 (MQ=255)

  ctaaattttccaatcgcgtattagtagcttgtgaattactcattccaacaattttataatcatccgtaacgcctttaattgtttctatTTg                                                                                           >  1:1577422‑M1/89‑91 (MQ=255)

   taaattttccaatcgcttattagtagcttgtgaattattcattccaacaattttataatcatccgtaacgcctttaattgtttctatTTGt                                                                                          <  2:163008‑M1/4‑1 (MQ=255)

   taaattttccaatcgcttattagtagcttgtgaattattcattccaacaattttataatcatccgtaacgcctttaattgtttctatTTGt                                                                                          <  1:3602225‑M1/4‑1 (MQ=255)

   tGACAAACTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGt                                                                                          <  2:2728892/91‑1 (MQ=255)

    aaattttccaatcacttattagtagcttgtgaattattcattcgaacaattttataatcatccgtaacgcctttaattgtttctatTTGtt                                                                                         >  1:3878446‑M1/87‑91 (MQ=255)

     aCAAACTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTc                                                                                        <  2:1751387/91‑1 (MQ=255)

      cAAACTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCa                                                                                       >  1:2201427/1‑91 (MQ=255)

       aaaCTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCaa                                                                                      <  1:1722001/91‑1 (MQ=255)

       aaaCTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCaa                                                                                      >  1:3140915/1‑91 (MQ=255)

         aCTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑a                                                                                   >  1:3785856/1‑91 (MQ=255)

          cTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑Ac                                                                                  <  2:3634749/91‑1 (MQ=255)

           tAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑Acc                                                                                 <  2:600133/91‑1 (MQ=255)

           tAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑Acc                                                                                 <  1:2739517/91‑1 (MQ=255)

            aaaaGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑Accc                                                                                <  1:2321915/91‑1 (MQ=255)

             aaaGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATCTTGTATCGAGTAATATTGTTCAAG‑ACCCa                                                                               >  1:3117328/1‑91 (MQ=255)

             aaaGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCa                                                                               >  1:53357/1‑91 (MQ=255)

             aaaGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCa                                                                               <  2:1239631/91‑1 (MQ=255)

                ggATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCGAAgg                                                                            <  1:3067858/91‑1 (MQ=255)

                    tttCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTCCAAG‑ACCCAAGGGTAc                                                                        >  2:3708932/1‑91 (MQ=255)

                     ttCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACt                                                                       <  2:3278224/91‑1 (MQ=255)

                     ttCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACt                                                                       <  2:3451052/91‑1 (MQ=255)

                       tagtagcttgtgaattattcattccaacaattttataatcatccgtaacgcctttaattgtttctatTTGTTCAAG‑ACCCAAGGGTACTTa                                                                     >  1:754717‑M1/68‑91 (MQ=255)

                       cGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTa                                                                     <  1:1749433/91‑1 (MQ=255)

                       cGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTa                                                                     <  1:618347/91‑1 (MQ=255)

                        ggTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTaa                                                                    <  1:2344257/91‑1 (MQ=255)

                         gtagcttgtgaattattcattccaacaattttataatcatccgtaacgcctttaattgtttctatTTGTTCAAG‑ACCCAAGGGTACTTaaa                                                                   >  2:1408990‑M1/66‑91 (MQ=255)

                          ttGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAAc                                                                  <  1:525748/91‑1 (MQ=255)

                           tGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACa                                                                 <  2:2134979/91‑1 (MQ=255)

                           tGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACa                                                                 <  2:209730/91‑1 (MQ=255)

                           tGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACa                                                                 <  2:745258/91‑1 (MQ=255)

                                atTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAg                                                            <  1:1832466/91‑1 (MQ=255)

                                 tttAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGa                                                           <  2:330464/91‑1 (MQ=255)

                                 tttAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGa                                                           >  2:2530091/1‑91 (MQ=255)

                                  ttAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGaa                                                          <  2:3476308/91‑1 (MQ=255)

                                   taactaaaAGGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGaaa                                                         <  1:3484294/91‑1 (MQ=255)

                                    aaataaaAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGaaaa                                                        <  1:1499035/91‑2 (MQ=255)

                                    aaataaaAAGGATACTTAATGATATGAGAATTTTAAACATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAAc                                                        >  2:2981697/1‑91 (MQ=255)

                                     aataaaAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACa                                                       <  2:2193659/91‑1 (MQ=255)

                                     aataaaAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACa                                                       >  2:2588609/1‑91 (MQ=255)

                                      ataaaAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACaa                                                      >  1:1943454/1‑91 (MQ=255)

                                        aaaaaGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAAtt                                                    >  2:3548737/1‑91 (MQ=255)

                                        aaaaaGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAAtt                                                    <  2:1768156/91‑1 (MQ=255)

                                         aaaaGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTa                                                   >  2:880064/1‑91 (MQ=255)

                                           aaGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTaaa                                                 <  2:2357529/91‑1 (MQ=255)

                                           aaGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTaaa                                                 >  1:2421643/1‑91 (MQ=255)

                                           aaGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTaaa                                                 <  1:2564193/91‑1 (MQ=255)

                                            aGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAg                                                <  1:2057162/91‑1 (MQ=255)

                                            aGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAg                                                >  1:2489036/1‑91 (MQ=255)

                                                tACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGt                                            <  1:1001171/91‑1 (MQ=255)

                                                tACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGt                                            <  1:2615896/91‑1 (MQ=255)

                                                tACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGt                                            >  1:2544756/1‑91 (MQ=255)

                                                 aCTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGtt                                           <  2:3785856/91‑1 (MQ=255)

                                                 aCTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGtt                                           >  2:2517614/1‑91 (MQ=255)

                                                 aCTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGtt                                           >  2:1435203/1‑91 (MQ=255)

                                                 aCTTAATGACATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGtt                                           >  1:1951251/1‑91 (MQ=255)

                                                  cTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTa                                          >  2:1298546/1‑91 (MQ=255)

                                                   ttAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTAc                                         >  1:3164311/1‑91 (MQ=255)

                                                       tGATATGAGAATATTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGgat                                     >  2:2519645/1‑91 (MQ=255)

                                                        gATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGgatg                                    >  1:2938620/1‑91 (MQ=255)

                                                        gATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGgatg                                    <  1:3336667/91‑1 (MQ=255)

                                                          tatGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGgatgat                                  <  1:2187477/91‑1 (MQ=255)

                                                            tGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATta                                >  2:1110836/1‑91 (MQ=255)

                                                            tGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATta                                >  1:1364881/1‑91 (MQ=255)

                                                             gagaATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATtat                               >  1:1225346/1‑91 (MQ=255)

                                                              agaATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGgatgatataa                              >  1:278681/1‑87 (MQ=255)

                                                               gaATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATaa                             >  2:1568042/1‑91 (MQ=255)

                                                                  ttttAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAAt                          <  1:1431710/91‑1 (MQ=255)

                                                                   tttAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAAtt                         <  2:1823438/91‑1 (MQ=255)

                                                                      aaaTATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAAttgtt                      >  1:3526774/1‑91 (MQ=255)

                                                                        atatTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAAttgtttg                    >  2:2540736/1‑89 (MQ=255)

                                                                        atatTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTgg                    >  2:3151818/1‑91 (MQ=255)

                                                                        atatTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTgg                    >  2:3243333/1‑91 (MQ=255)

                                                                          atTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaa                  <  1:1121058/91‑1 (MQ=255)

                                                                          atTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaa                  >  1:2942603/1‑91 (MQ=255)

                                                                          atTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaa                  <  1:3038948/91‑1 (MQ=255)

                                                                           ttGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaat                 <  2:3517274/91‑1 (MQ=255)

                                                                            tGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaatg                <  2:676853/91‑1 (MQ=255)

                                                                            tGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaatg                <  2:1201087/91‑1 (MQ=255)

                                                                             gTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaatga               <  2:503538/91‑1 (MQ=255)

                                                                                tCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGaata            >  2:1485572/1‑91 (MQ=255)

                                                                                   tttctatTTGTTTAAGTACCCTTGGGT‑CTTGAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAAtt         <  2:334264‑M1/84‑1 (MQ=255)

                                                                                    ttctatTTGTTTAAGTACCCTTGGGT‑CTTGAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTc        <  2:3532772‑M1/85‑1 (MQ=255)

                                                                                    ttctatTTGTTTAAGTACCCTTGGGT‑CTTGAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTc        <  1:580145‑M1/85‑1 (MQ=255)

                                                                                    gTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTc        <  1:446103/91‑1 (MQ=255)

                                                                                    gTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTc        >  1:681667/1‑91 (MQ=255)

                                                                                       atatTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTcaca     <  1:2517614/91‑1 (MQ=255)

                                                                                       atatTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTcaca     <  2:53874/91‑1 (MQ=255)

                                                                                         atTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAg   >  1:3668596/1‑91 (MQ=255)

                                                                                         atTGTTCAAG‑ACCCAAGGGTACTTAAACAAACAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAg   >  2:2960057/1‑91 (MQ=255)

                                                                                          TTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGc  >  1:3721980‑M1/1‑91 (MQ=255)

GCCTGACAAACTAAAAGGATTTTCGGTTGAATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGC  >  USA300TCH1516_ALE/181879‑182059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.