BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	181969 =	199 (1.040)	16 (0.090)	10/150	NT	8.1%	coding (32/1110 nt)	glgA	Glycogen synthase
*	?	USA300TCH1516_ALE	181998 =	178 (1.000)	16 (0.090)	10/150	NT	8.1%	coding (61/1110 nt)	glgA	Glycogen synthase

Only 100 of 252 total aligned reads displayed.

ATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTGGAAAATTTAGATT  >  USA300TCH1516_ALE/181909‑182088

   tttAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGa                                                                                        >  2:2530341/1‑91 (MQ=255)

    ttAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGaa                                                                                       <  2:3476308/91‑1 (MQ=255)

     gaattattcattccaacaattttataatcatccgtaacgcctttaattgtttctatttgttcaagacccaagggtacttaaacaaATAGaa                                                                                       <  2:3532772‑M2/6‑1 (MQ=255)

     gaattattcattccaacaattttataatcatccgtaacgcctttaattgtttctatttgttcaagacccaagggtacttaaacaaATAGaa                                                                                       <  1:1981550‑M2/6‑1 (MQ=255)

      aaataaaAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAAc                                                                                     <  2:3608071/91‑1 (MQ=255)

       attattcattccaacaattttataatcatccgtaacgcctttaattgtttctatttgttcaagacccaagggtacttaaacaaATAGAAAc                                                                                     <  1:2205077‑M2/8‑1 (MQ=255)

       aataaaAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACa                                                                                    <  2:1212564/91‑1 (MQ=255)

       aataaaAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACa                                                                                    >  2:2952982/1‑91 (MQ=255)

       aataaaAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACa                                                                                    <  2:2131497/91‑1 (MQ=255)

       aataaaAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACa                                                                                    <  2:2193659/91‑1 (MQ=255)

        ataaaAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACaa                                                                                   >  1:1943454/1‑91 (MQ=255)

         taaaAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAAt                                                                                  <  2:1790615/91‑1 (MQ=255)

            aaaGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTaa                                                                               <  2:3284396/91‑1 (MQ=255)

             aaGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTaaa                                                                              >  1:2421643/1‑91 (MQ=255)

              aGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAg                                                                             <  1:2057162/91‑1 (MQ=255)

                 aTACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCg                                                                          >  2:3644975/1‑91 (MQ=255)

                  tACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGt                                                                         >  1:2544756/1‑91 (MQ=255)

                  tACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGt                                                                         <  1:1001171/91‑1 (MQ=255)

                   aCTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAGGGGTACTTAAACAAATAGAAACAATTAAAGGCGtt                                                                        >  1:3563513/1‑91 (MQ=255)

                   aCTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGtt                                                                        >  1:1766902/1‑91 (MQ=255)

                   aCTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGtt                                                                        >  2:1435203/1‑91 (MQ=255)

                   aCTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGtt                                                                        >  2:1700861/1‑91 (MQ=255)

                   aCTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGtt                                                                        >  2:2517614/1‑91 (MQ=255)

                   aCTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGtt                                                                        <  2:3785856/91‑1 (MQ=255)

                    cTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTa                                                                       <  1:3818347/91‑1 (MQ=255)

                    cTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTa                                                                       >  2:1298546/1‑91 (MQ=255)

                      tAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACg                                                                     <  1:1301204/91‑1 (MQ=255)

                         tGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGgat                                                                  >  2:2362969/1‑91 (MQ=255)

                         tGATATGAGAATATTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGgat                                                                  >  2:2519645/1‑91 (MQ=255)

                          gATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGgatg                                                                 >  1:2938620/1‑91 (MQ=255)

                          gATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGgatg                                                                 <  1:3336667/91‑1 (MQ=255)

                            tatGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGgatgat                                                               <  1:2187606/91‑1 (MQ=255)

                             atGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGAtt                                                              <  2:651737/91‑1 (MQ=255)

                             atGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGAtt                                                              >  2:1586536/1‑91 (MQ=255)

                              tGAGAATTTTAAATATTGTATCGAGTAATATAGTTCAAG‑ACCCAAGGGTACTTATACAAATAGAAACGATTAAAGGCGTGACGGATGATta                                                             >  2:2963345/1‑91 (MQ=255)

                               gagaATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATtat                                                            >  1:1225308/1‑91 (MQ=255)

                                agaATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGgatgatataa                                                           >  1:278681/1‑87 (MQ=255)

                                 gaATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATaa                                                          <  2:1418049/91‑1 (MQ=255)

                                   aTTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATaaaa                                                        >  2:257143/1‑91 (MQ=255)

                                     tttAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAAtt                                                      <  2:1823711/91‑1 (MQ=255)

                                     tttAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAAtt                                                      <  2:2201427/91‑1 (MQ=255)

                                        aaaTATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAAttgtt                                                   >  2:3315002/1‑91 (MQ=255)

                                        aaaTATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAAttgtt                                                   >  1:3526774/1‑91 (MQ=255)

                                          atatTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTgg                                                 >  2:3151818/1‑91 (MQ=255)

                                            atTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaa                                               <  1:1121058/91‑1 (MQ=255)

                                            atTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaa                                               >  1:2942603/1‑91 (MQ=255)

                                            atTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaa                                               <  1:3038948/91‑1 (MQ=255)

                                             ttGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaat                                              <  2:3517452/91‑1 (MQ=255)

                                              tGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaatg                                             <  2:676853/91‑1 (MQ=255)

                                              tGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaatg                                             <  2:1201087/91‑1 (MQ=255)

                                              tGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaatg                                             >  2:3219222/1‑91 (MQ=255)

                                              tGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaatg                                             <  1:2454149/91‑1 (MQ=255)

                                                tATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGgaatgaa                                           <  2:1518549/91‑1 (MQ=255)

                                                  tCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGaata                                         <  1:3150669/91‑1 (MQ=255)

                                                  tCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGaata                                         <  1:2344487/91‑1 (MQ=255)

                                                   cGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGaataa                                        >  2:1994946/1‑91 (MQ=255)

                                                    gtttctatTTGTTTAAGTACCCTTGGGT‑CTTGAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGaataat                                       <  1:594896‑M1/83‑1 (MQ=255)

                                                    gAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGaataat                                       >  1:2582991/1‑91 (MQ=255)

                                                      ttctatTTGTTTAAGTACCCTTGGGT‑CTTGAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTc                                     <  1:580145‑M1/85‑1 (MQ=255)

                                                      gTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTc                                     >  1:681667/1‑91 (MQ=255)

                                                      gTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTc                                     <  1:1568042/91‑1 (MQ=255)

                                                        aaTATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTcac                                   >  1:717106/1‑91 (MQ=255)

                                                         atatTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTcaca                                  <  1:2517614/91‑1 (MQ=255)

                                                         atatTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTcaca                                  <  2:53217/91‑1 (MQ=255)

                                                          tatTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACaa                                 >  2:3764842/1‑91 (MQ=255)

                                                           atTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAg                                >  1:3668596/1‑91 (MQ=255)

                                                            tttgtttaagtacccttgggtcttgaacaaATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAg                                >  1:2134074‑M2/31‑91 (MQ=255)

                                                            tttgtttaagtacccttgggtcttgaacaaATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAg                                >  1:1355900‑M2/31‑91 (MQ=255)

                                                             TGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGct                              <  1:2724880‑M1/91‑1 (MQ=255)

                                                             TGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGct                              >  1:3254156‑M1/1‑91 (MQ=255)

                                                              GTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGcta                             >  2:919791‑M1/1‑91 (MQ=255)

                                                              GTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGcta                             <  2:309425‑M1/91‑1 (MQ=255)

                                                              GTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGcta                             >  1:1386894‑M1/1‑91 (MQ=255)

                                                              GTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGcta                             <  1:308659‑M1/91‑1 (MQ=255)

                                                              GTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATAGTTGGAATGAATAATTCACAAGcta                             <  2:309074‑M1/91‑1 (MQ=255)

                                                               gtttaagtacccttgggtcttgaacaaATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGcta                             >  2:1083806‑M2/28‑91 (MQ=255)

                                                               TTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGctac                            <  2:2705431‑M1/91‑1 (MQ=255)

                                                               TTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGctac                            <  1:1412151‑M1/91‑1 (MQ=255)

                                                                TCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGctact                           >  2:3385490‑M1/1‑91 (MQ=255)

                                                                 cAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGctacta                          >  1:1627353/1‑91 (MQ=255)

                                                                   aagtacccttgggtcttgaacaaATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACtaa                         >  2:344291‑M2/24‑91 (MQ=255)

                                                                    g‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACtaata                       >  1:1562962/1‑91 (MQ=255)

                                                                    g‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACtaata                       >  1:933083/1‑91 (MQ=255)

                                                                         cAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCg                   >  1:1881104/1‑91 (MQ=255)

                                                                           aGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGAt                 >  2:1757292/1‑91 (MQ=255)

                                                                            gggTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGAtt                >  2:2458086/1‑91 (MQ=255)

                                                                             ggTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTg               >  1:41384/1‑91 (MQ=255)

                                                                             ggTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTg               <  1:1993310/91‑1 (MQ=255)

                                                                             ggTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTg               <  2:1315918/91‑1 (MQ=255)

                                                                                 cTTAAACAAATAGAAGCAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATTAATAATTCACAAGCTACTAATAAGCGATTGGaaa           <  2:2735260/91‑1 (MQ=255)

                                                                                 cTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTGGaaa           <  1:2588609/91‑1 (MQ=255)

                                                                                 cTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTGGaaa           >  1:1452005/1‑91 (MQ=255)

                                                                                  ttAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTGGaaaa          <  1:3192221/91‑1 (MQ=255)

                                                                                   tAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTGGAAAAt         <  1:809918/91‑1 (MQ=255)

                                                                                    aaaCAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTGGAAAAtt        <  1:1594589/91‑1 (MQ=255)

                                                                                      acaaATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTGGAAAATTTa      <  1:3602225‑M2/87‑1 (MQ=255)

                                                                                       caaATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTGGAAAATTTAg     >  2:420697‑M2/4‑91 (MQ=255)

                                                                                        aaATAGAAACAATTAAAGGCGTTACGGATGATTATGAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTGGAAAATTTAGa    <  1:1811449‑M2/89‑1 (MQ=255)

                                                                                         aATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTGGAAAATTTAGAt   >  2:2789231‑M2/2‑91 (MQ=255)

                                                                                          aTAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTGGAAAATTTAGAtt  <  2:354757/91‑1 (MQ=255)

ATATTTAAATAAAAAGGATACTTAATGATATGAGAATTTTAAATATTGTATCGAGTAATATTGTTCAAG‑ACCCAAGGGTACTTAAACAAATAGAAACAATTAAAGGCGTTACGGATGATTATAAAATTGTTGGAATGAATAATTCACAAGCTACTAATAAGCGATTGGAAAATTTAGATT  >  USA300TCH1516_ALE/181909‑182088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.