BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 280894	202 (1.060)	18 (0.110) +TTAATTGGGAGTA	7/134	NT	10.5%	intergenic (‑146/+11)	USA300HOU_RS01225/USA300HOU_RS01230	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	855632 =	165 (0.870)	18 (0.110) +TTAATTGGGAGTA	7/134	NT	10.5%	intergenic (+163/‑597)	zipA_1/cggR	Cell division protein ZipA/Central glycolytic genes regulator

Only 100 of 249 total aligned reads displayed.

TGGGACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGTTT  >  USA300TCH1516_ALE/280804‑280984

tggGACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGtttt                                                                                            >  2:899326/1‑91 (MQ=255)

tggGACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGtttt                                                                                            >  2:3461000/1‑91 (MQ=255)

tggGACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAACCATGACAAAGTAAAGTCATAGCTGtttt                                                                                            >  2:2324648/1‑91 (MQ=255)

 gggACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTg                                                                                           >  1:2971469/1‑91 (MQ=255)

   gacgacCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGt                                                                                         >  1:3135864/1‑91 (MQ=255)

    acgacCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGAAAAGTCATAGCTGTTTTGGta                                                                                        <  2:376829/91‑1 (MQ=255)

     cgacCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGtat                                                                                       <  1:2819675/91‑1 (MQ=255)

     cgacCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGtat                                                                                       <  1:1358362/91‑1 (MQ=255)

     cgacCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGtat                                                                                       <  2:1588172/91‑1 (MQ=255)

        ccAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGa                                                                                    >  1:2324704/1‑91 (MQ=255)

        ccAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGa                                                                                    >  1:1551081/1‑91 (MQ=255)

         cAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGAt                                                                                   >  2:1892699/1‑91 (MQ=255)

            ataaatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTc                                                                                <  2:65492/91‑1 (MQ=255)

                atTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCattt                                                                            >  2:3645572/1‑91 (MQ=255)

                atTTTGCGAAAATATCATCGCTGTCCTACTCCCAATTAAAAAACGGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCattt                                                                            <  1:1558375/91‑1 (MQ=255)

                 ttttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCattta                                                                           <  1:3706328/91‑1 (MQ=255)

                  tttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttat                                                                          <  2:1543069/91‑1 (MQ=255)

                  tttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttat                                                                          >  2:3178163/1‑91 (MQ=255)

                   ttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttatt                                                                         <  1:1224336/91‑1 (MQ=255)

                     gCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTAtttt                                                                       >  1:3502050/1‑91 (MQ=255)

                     gCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTAtttt                                                                       <  2:2828838/91‑1 (MQ=255)

                      cGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTAttttt                                                                      <  2:3334736/91‑1 (MQ=255)

                      cGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTAttttt                                                                      >  1:2390403/1‑91 (MQ=255)

                      cGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTAttttt                                                                      >  1:1985313/1‑91 (MQ=255)

                       gAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTa                                                                     >  1:2436966/1‑91 (MQ=255)

                       gAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTa                                                                     <  1:1995497/91‑1 (MQ=255)

                         aaaTATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACg                                                                   >  1:1893740/1‑91 (MQ=255)

                             atcatcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTa                                                               <  2:3865614/91‑1 (MQ=255)

                              tcatcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAg                                                              >  2:3037457/1‑91 (MQ=255)

                               catcTCTGTCCTACTCCCAATTAAAAAACAGCCGTGACAAAGTAAAGTCATAGCTGTTTCGGTATAGATGTCATTTATTTTTACGTTTAGt                                                             <  1:3450051/91‑1 (MQ=255)

                               catcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGt                                                             <  1:521488/91‑1 (MQ=255)

                               catcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGt                                                             <  2:1358986/91‑1 (MQ=255)

                               catcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTGACGTTTAGt                                                             >  1:3708490/1‑91 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGtt                                                            >  1:458213/1‑91 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGtt                                                            >  2:2129342/1‑91 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGtt                                                            <  2:2350980/91‑1 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGtt                                                            >  1:3032890/1‑91 (MQ=255)

                                  ctctGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTaa                                                          <  1:1318906/91‑1 (MQ=255)

                                      gTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATAc                                                      <  2:561049/91‑1 (MQ=255)

                                        ccTACACCCAAATAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACtt                                                    <  2:655114/91‑1 (MQ=255)

                                         cTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTc                                                   >  1:1659730/1‑91 (MQ=255)

                                          tACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCa                                                  <  1:3054875/91‑1 (MQ=255)

                                           aCTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCaa                                                 >  1:1075231/1‑91 (MQ=255)

                                           aCTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCaa                                                 <  1:2722995/91‑1 (MQ=255)

                                               ccAATGAAAAAACAGCCATGACAAAGTAAAGTCATAGCTATTTTGGTATAGATATCATTTATTTTTACGTTTAGTTAAATACTTCAAACCa                                             <  1:3606203/91‑1 (MQ=255)

                                                cAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCaa                                            >  1:1191928/1‑91 (MQ=255)

                                                    tAAAAAACTGCCATGACAAAGTAAAGTCATAGCTGTTTTTGTATATATGTTATTTATTTTTACGTTTAGTTAAATACTTTAAACCAACTGc                                        >  2:2780041/1‑91 (MQ=255)

                                                    tAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtc                                        >  2:1425246‑M1/1‑39 (MQ=255)

                                                    tAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGc                                        <  1:3645572/91‑1 (MQ=255)

                                                    tAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGc                                        <  1:2559964/91‑1 (MQ=255)

                                                    tAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGc                                        <  2:1709481/91‑1 (MQ=255)

                                                     aaaaaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCa                                       <  1:2855842/91‑1 (MQ=255)

                                                     aaaaaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCa                                       >  1:3058262/1‑91 (MQ=255)

                                                      aaaaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtccc                                      >  2:2223709‑M1/1‑37 (MQ=255)

                                                      aaaaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCaa                                      >  2:3122668/1‑91 (MQ=255)

                                                       aaaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCaaa                                     >  2:735630/1‑91 (MQ=255)

                                                        aaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAg                                    >  1:1959749/1‑91 (MQ=255)

                                                         aaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccacc                                   >  2:3749866‑M1/1‑34 (MQ=255)

                                                         aaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccacc                                   >  1:3303534‑M1/1‑34 (MQ=255)

                                                          aCAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccacca                                  >  2:1393099‑M1/1‑33 (MQ=255)

                                                            aGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccaccaca                                >  2:3652858‑M1/1‑31 (MQ=255)

                                                            aGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcacaaaatttatttggtcgtcccaccaca                                >  1:168196‑M1/1‑31 (MQ=255)

                                                            aGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCg                                <  2:3213543/91‑1 (MQ=255)

                                                               cATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCgtgt                             >  1:756278/1‑91 (MQ=255)

                                                                aTGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTa                            >  2:1010121/1‑91 (MQ=255)

                                                                aTGACAAAGTAAAGCCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTa                            >  2:3294454/1‑91 (MQ=255)

                                                                 tGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTAc                           >  1:3829166/1‑91 (MQ=255)

                                                                   aCAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTAccc                         <  1:3800759/91‑1 (MQ=255)

                                                                   aCAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTCTAccc                         >  2:3576659/1‑91 (MQ=255)

                                                                   aCAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTAAAATACTTCAAACCAACTGCAAAGACCGTGTAccc                         <  2:2580995/91‑1 (MQ=255)

                                                                    cAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCg                        <  1:712846/91‑1 (MQ=255)

                                                                    cAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCg                        >  1:612632/1‑91 (MQ=255)

                                                                     aaagtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCgg                       <  1:1004753/91‑1 (MQ=255)

                                                                     aaagtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCgg                       <  1:434849/91‑1 (MQ=255)

                                                                     aaagtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCgg                       <  1:3244523/91‑1 (MQ=255)

                                                                       agtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCt                     >  2:2504200/1‑91 (MQ=255)

                                                                       agtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCt                     <  1:3404158/91‑1 (MQ=255)

                                                                        gtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTa                    <  2:70688/91‑1 (MQ=255)

                                                                        gtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTa                    <  2:1201785/91‑1 (MQ=255)

                                                                         taaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTAt                   >  2:1364180/1‑91 (MQ=255)

                                                                         ctttgtCATGGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTAt                   >  2:2415233/5‑91 (MQ=255)

                                                                            agtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGt                >  1:2224914/1‑91 (MQ=255)

                                                                            agtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGt                <  2:1985313/91‑1 (MQ=255)

                                                                            agtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGt                <  1:362272/91‑1 (MQ=255)

                                                                              tCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGttt              >  2:2693107/1‑91 (MQ=255)

                                                                              tCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGttt              >  2:2060446/1‑91 (MQ=255)

                                                                                aTAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGt            <  1:2393809/91‑1 (MQ=255)

                                                                                aTAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGt            >  2:1250228/1‑91 (MQ=255)

                                                                                 tAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTa           <  2:2676682/91‑1 (MQ=255)

                                                                                 tAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTa           <  2:513835/91‑1 (MQ=255)

                                                                                  aGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTAt          <  2:1113167/91‑1 (MQ=255)

                                                                                    cTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCa        >  2:3469979/1‑91 (MQ=255)

                                                                                     tGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCaa       <  1:525442/91‑1 (MQ=255)

                                                                                     tGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCaa       <  1:522322/91‑1 (MQ=255)

                                                                                      gTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAAt      >  1:1128166/1‑91 (MQ=255)

                                                                                      gTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAAt      <  1:39753/91‑1 (MQ=255)

                                                                                       ttttGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATg     <  1:3299726/91‑1 (MQ=255)

                                                                                       ttttGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATg     >  2:847814/1‑91 (MQ=255)

                                                                                         ttGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGtt   >  1:2776645/1‑91 (MQ=255)

                                                                                          tGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCTAAGACCGTGTACCCGGCTATGGTTTGTATCAATGttt  >  2:2395928/1‑91 (MQ=255)

TGGGACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGTTT  >  USA300TCH1516_ALE/280804‑280984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.