New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 425019204 (1.070)14 (0.080) 10/146 NT 6.7% intergenic (+34/‑392) USA300HOU_RS01985/gpmA_1 hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase
?USA300TCH1516_ALE = 425031 207 (1.190)intergenic (+46/‑380) USA300HOU_RS01985/gpmA_1 hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase

Only 100 of 309 total aligned reads displayed.

GGTTCAATTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTA  >  USA300TCH1516_ALE/424929‑425109
                                                                                          |                                                                                          
ggTTCAATTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATG                                                                                            >  1:2042978‑M1/1‑91 (MQ=255)
ggTTCAATTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATG                                                                                            >  1:1272415‑M1/1‑91 (MQ=255)
  ttCAATTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGc                                                                                          <  1:3821520/91‑1 (MQ=255)
    cAATTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCAt                                                                                        <  1:3487704/91‑1 (MQ=255)
    cAATTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAAGTCAATTGGAAATTGAAATAAAGATGGCAt                                                                                        <  2:3384403/91‑1 (MQ=255)
      aTTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTc                                                                                      <  1:2910133/91‑1 (MQ=255)
         aTCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGt                                                                                   <  2:442135/91‑1 (MQ=255)
          tCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGtt                                                                                  >  2:869713/1‑91 (MQ=255)
          tCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGtt                                                                                  >  1:2454613/1‑91 (MQ=255)
           cTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTg                                                                                 <  1:2648508/91‑1 (MQ=255)
             tAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTc                                                                               >  1:1301873‑M2/1‑90 (MQ=255)
             tAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTc                                                                               >  2:3315094‑M2/1‑90 (MQ=255)
              aaTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAGTAAAGATGGCATTCAGATGTca                                                                              <  2:3136433‑M2/91‑3 (MQ=255)
              aaTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTca                                                                              >  2:1784582‑M2/1‑89 (MQ=255)
                  gCAATCGTAACGTTAATTTTAAGCGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatctt                                                                          >  1:3019579‑M2/1‑85 (MQ=255)
                  gCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatctt                                                                          <  2:2274300‑M2/91‑7 (MQ=255)
                   cAATCGTAACGTTAATTTTAATAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatcttt                                                                         <  2:1298569‑M2/91‑8 (MQ=255)
                   cAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatcttt                                                                         <  2:634620‑M2/91‑8 (MQ=255)
                    aaTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGacaactgaatgccatcttta                                                                        <  1:2153413‑M1/91‑21 (MQ=255)
                    aaTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCtttt                                                                        >  1:1235396/1‑91 (MQ=255)
                    aaTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAAGTGAAATAAAGATGGCATTCAGTTGTCATCtttt                                                                        <  1:1041953/91‑1 (MQ=255)
                     aTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGacaactgaatgccatctttat                                                                       <  1:1730522‑M1/91‑22 (MQ=255)
                     aTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCttttt                                                                       <  1:186106/91‑1 (MQ=255)
                     aTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCttttt                                                                       <  2:127464/91‑1 (MQ=255)
                     aTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCttttt                                                                       >  1:2965048/1‑91 (MQ=255)
                      tCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCtttttt                                                                      >  1:3626701/1‑91 (MQ=255)
                        gTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTAt                                                                    <  2:2126491/91‑1 (MQ=255)
                         tAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGacaactgaatgccatctttatttca                                                                   <  2:1871767‑M1/91‑26 (MQ=255)
                          aaCGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTAttt                                                                  >  2:1893291/1‑91 (MQ=255)
                            cGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGCATTTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGc                                                                >  1:1410388/1‑91 (MQ=255)
                            cGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGc                                                                <  1:1368674/91‑1 (MQ=255)
                             gTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCg                                                               >  2:169068/1‑91 (MQ=255)
                             gTTAATTTTAAGAGCTAGGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCg                                                               <  2:356343/91‑1 (MQ=255)
                              ttAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGt                                                              >  2:1337120/1‑91 (MQ=255)
                                 aTTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaa                                                           >  2:3280441/1‑91 (MQ=255)
                                  ttttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaaa                                                          <  2:1950910/91‑1 (MQ=255)
                                  ttttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaaa                                                          >  1:2513468/1‑91 (MQ=255)
                                      aaGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATgg                                                      >  1:1180296/1‑91 (MQ=255)
                                       agagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGt                                                     <  1:336318/91‑1 (MQ=255)
                                         agCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCa                                                   <  1:1453598/91‑1 (MQ=255)
                                            tATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAata                                                >  2:3072078/1‑91 (MQ=255)
                                              tGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATg                                              <  2:2528207/91‑1 (MQ=255)
                                               gCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGt                                             <  2:2425545/91‑1 (MQ=255)
                                                cGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGta                                            >  2:1099100/1‑91 (MQ=255)
                                                 gTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGtat                                           >  2:278122/1‑91 (MQ=255)
                                                  tAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGtatt                                          <  1:1887123/91‑1 (MQ=255)
                                                    aataatAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGtattat                                        <  1:351052/91‑1 (MQ=255)
                                                    aataatAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGtattat                                        <  2:950763/91‑1 (MQ=255)
                                                     ataataAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATtata                                       >  2:1536247/1‑91 (MQ=255)
                                                         taaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAatat                                   >  1:3161823/1‑91 (MQ=255)
                                                         taaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAatat                                   >  1:2766358/1‑91 (MQ=255)
                                                          aaaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAtt                                  <  1:1132021/91‑1 (MQ=255)
                                                          aaaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAtt                                  >  1:2390884/1‑91 (MQ=255)
                                                           aaaaaaTTCTATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAttt                                 <  1:3725126/91‑1 (MQ=255)
                                                           aaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatctttatttcaaattccaatagaatttttttattatttacgcata                                 <  2:1491818‑M2/91‑48 (MQ=255)
                                                           aaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAttt                                 <  2:116523/91‑1 (MQ=255)
                                                             aaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGa                               >  1:2721027/1‑91 (MQ=255)
                                                             aaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGa                               >  1:687765/1‑91 (MQ=255)
                                                             aaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGCTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGa                               >  1:2336993/1‑91 (MQ=255)
                                                               aaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaaa                             >  2:1995362/1‑91 (MQ=255)
                                                                aTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaaaa                            <  2:3108241/91‑1 (MQ=255)
                                                                  tCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATg                          >  1:99014/1‑91 (MQ=255)
                                                                   cAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGt                         >  2:320321/1‑91 (MQ=255)
                                                                   cAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGt                         <  1:3059965/91‑1 (MQ=255)
                                                                   cAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGt                         >  1:2809517/1‑91 (MQ=255)
                                                                    aaTTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTa                        >  1:2196208/1‑91 (MQ=255)
                                                                       tGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagat                     <  2:2291968/91‑1 (MQ=255)
                                                                        ggAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagata                    >  2:48892/1‑91 (MQ=255)
                                                                         gAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagataa                   <  1:1166235/91‑1 (MQ=255)
                                                                            aTTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTggataagat                <  2:2609795/91‑1 (MQ=255)
                                                                            aTTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagataagat                <  1:2376172/91‑1 (MQ=255)
                                                                            aTTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagataagat                <  1:1159726/91‑1 (MQ=255)
                                                                            aTTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagataagat                <  1:839383/91‑1 (MQ=255)
                                                                            aTTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagataagat                >  2:1830312/1‑91 (MQ=255)
                                                                             ttGAAATAAAGATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgtt               <  1:3394032‑M2/91‑66 (MQ=255)
                                                                              tGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAg              <  1:819913/91‑1 (MQ=255)
                                                                              tGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCATGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAg              >  1:1571859/1‑91 (MQ=255)
                                                                               gAAATAAAGATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttac             <  2:2462698‑M2/91‑68 (MQ=255)
                                                                               gAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAgg             <  1:2323148/91‑1 (MQ=255)
                                                                                  aTAAAGATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgat          <  2:556479‑M2/91‑71 (MQ=255)
                                                                                  aTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAtt          >  1:478715/1‑91 (MQ=255)
                                                                                  aTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAtt          >  1:1664928/1‑91 (MQ=255)
                                                                                  aTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAtt          <  1:2274300/91‑1 (MQ=255)
                                                                                    aaaGATGacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattg        >  1:2622685‑M1/1‑7 (MQ=255)
                                                                                     aaGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTaaa       >  2:2978967/1‑91 (MQ=255)
                                                                                     aaGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTaaa       >  2:3456235/1‑91 (MQ=255)
                                                                                      aGATGacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgca      >  2:258510‑M1/1‑5 (MQ=255)
                                                                                      aGATGacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgca      >  2:126477‑M1/1‑5 (MQ=255)
                                                                                      aGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTaaaa      >  2:2919857/1‑91 (MQ=255)
                                                                                      aGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTaaaa      <  1:1507354/91‑1 (MQ=255)
                                                                                         tGacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaatt   >  1:370864‑M1/1‑2 (MQ=255)
                                                                                         tGacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaatt   <  2:3551220‑M1/91‑90 (MQ=255)
                                                                                         tGacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaatt   >  2:3750675‑M1/1‑2 (MQ=255)
                                                                                         tGacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaatt   <  1:93851‑M1/91‑90 (MQ=255)
                                                                                         tGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaatt   <  1:338613‑M2/91‑78 (MQ=255)
                                                                                         tGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGt   >  1:1756512/1‑91 (MQ=255)
                                                                                          ggCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGta  <  2:380649/91‑1 (MQ=255)
                                                                                          ggCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGta  <  2:94032/91‑1 (MQ=255)
                                                                                          ggCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGta  >  2:220197/1‑91 (MQ=255)
                                                                                          gacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaatta  >  1:158285‑M1/1‑1 (MQ=255)
                                                                                          |                                                                                          
GGTTCAATTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTA  >  USA300TCH1516_ALE/424929‑425109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.