BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 425019	204 (1.070)	14 (0.080)	10/146	NT	6.7%	intergenic (+34/‑392)	USA300HOU_RS01985/gpmA_1	hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase
*	?	USA300TCH1516_ALE	= 425031	207 (1.190)	14 (0.080)	10/146	NT	6.7%	intergenic (+46/‑380)	USA300HOU_RS01985/gpmA_1	hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase

Only 100 of 263 total aligned reads displayed.

TTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTAATAAATTAA  >  USA300TCH1516_ALE/424941‑425118

ttAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGt                                                                                         <  1:2382396/91‑1 (MQ=255)

 tAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTc                                                                                        >  1:1301873‑M2/1‑90 (MQ=255)

  aaTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAGTAAAGATGGCATTCAGATGTca                                                                                       <  2:3136433‑M2/91‑3 (MQ=255)

  aaTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTca                                                                                       >  1:370864‑M2/1‑89 (MQ=255)

  aaTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTca                                                                                       >  1:1205729‑M2/1‑89 (MQ=255)

  aaTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTca                                                                                       <  1:93851‑M2/91‑3 (MQ=255)

  aaTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTca                                                                                       >  2:3750675‑M2/1‑89 (MQ=255)

  aaTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTca                                                                                       >  2:1784582‑M2/1‑89 (MQ=255)

    ttGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatc                                                                                     <  1:2333134‑M2/91‑5 (MQ=255)

     tGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatct                                                                                    >  2:258510‑M2/1‑86 (MQ=255)

     tGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatct                                                                                    >  2:126477‑M2/1‑86 (MQ=255)

     tGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatct                                                                                    >  1:1582827‑M2/1‑86 (MQ=255)

      gCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatctt                                                                                   <  2:2274300‑M2/91‑7 (MQ=255)

       cAATCGTAACGTTAATTTTAATAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatcttt                                                                                  <  2:1298569‑M2/91‑8 (MQ=255)

        aaTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAAGTGAAATAAAGATGGCATTCAGTTGTCATCtttt                                                                                 <  1:1041953/91‑1 (MQ=255)

         aTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCttttt                                                                                <  1:186106/91‑1 (MQ=255)

          tCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCtttttt                                                                               >  1:295643/1‑91 (MQ=255)

          tCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCtttttt                                                                               >  2:3299462/1‑91 (MQ=255)

           cGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTa                                                                              <  1:566607/91‑1 (MQ=255)

            gTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTAt                                                                             >  2:2496089/1‑91 (MQ=255)

            gTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTAt                                                                             <  2:2126491/91‑1 (MQ=255)

              aaCGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTAttt                                                                           >  2:1893068/1‑91 (MQ=255)

                cGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCACTTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGc                                                                         >  2:2626756/1‑91 (MQ=255)

                cGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGc                                                                         <  1:1368674/91‑1 (MQ=255)

                cGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGc                                                                         >  1:3498410/1‑91 (MQ=255)

                 gTTAATTTAAAGAGGAATGAGGAAATAAGAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCAGTCAGTTGTCATCTTTTTTATTTGCg                                                                        <  2:3180151/91‑1 (MQ=255)

                  ttAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGt                                                                       >  2:1337120/1‑91 (MQ=255)

                   tAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTg                                                                      <  2:3051995/91‑1 (MQ=255)

                   tAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTg                                                                      <  2:354022/91‑1 (MQ=255)

                     aTTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaa                                                                    >  2:3280149/1‑91 (MQ=255)

                      ttttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaaa                                                                   >  1:2514199/1‑91 (MQ=255)

                      ttttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaaa                                                                   >  1:3526690/1‑91 (MQ=255)

                       tttGAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaaaa                                                                  <  1:3006874/91‑1 (MQ=255)

                       tttATGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaaaa                                                                  >  1:3069136/1‑91 (MQ=255)

                        ttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAAt                                                                 <  1:2269227/91‑1 (MQ=255)

                         tAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATg                                                                >  1:27950/1‑91 (MQ=255)

                           agagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGt                                                              >  2:1926752/1‑91 (MQ=255)

                             agCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCa                                                            >  1:2698388/1‑91 (MQ=255)

                                   gCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGt                                                      <  2:2425545/91‑1 (MQ=255)

                                    cGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGta                                                     >  2:1099237/1‑91 (MQ=255)

                                     gTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGtat                                                    >  2:278122/1‑91 (MQ=255)

                                     gTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGtat                                                    <  1:890050/91‑1 (MQ=255)

                                        aataatAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGtattat                                                 <  2:950763/91‑1 (MQ=255)

                                          taataaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTataa                                               >  1:2762641/1‑91 (MQ=255)

                                            ataaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTataata                                             >  2:2300394/1‑91 (MQ=255)

                                            ataaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTataata                                             <  1:2428575/91‑1 (MQ=255)

                                            ataaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTataata                                             >  2:464922/1‑91 (MQ=255)

                                             taaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAatat                                            >  1:3161823/1‑91 (MQ=255)

                                              aaaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAtt                                           <  1:1570725/91‑1 (MQ=255)

                                              aaaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAtt                                           <  1:2061249/91‑1 (MQ=255)

                                               aaaaaaTTCTATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAttt                                          <  1:3725126/91‑1 (MQ=255)

                                               aaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatctttatttcaaattccaatagaatttttttattatttacgcata                                          <  2:1491818‑M2/91‑48 (MQ=255)

                                               aaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAttt                                          <  2:116523/91‑1 (MQ=255)

                                                aaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTg                                         <  2:93851/91‑1 (MQ=255)

                                                 aaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGa                                        >  2:387653/1‑91 (MQ=255)

                                                  aaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaa                                       <  1:3281093/91‑1 (MQ=255)

                                                  aaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaa                                       <  2:1039418/91‑1 (MQ=255)

                                                   aaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaaa                                      >  2:1995362/1‑91 (MQ=255)

                                                    aTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaaaa                                     <  1:1897813/91‑1 (MQ=255)

                                                    aTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaaaa                                     <  2:3108241/91‑1 (MQ=255)

                                                    aTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaaaa                                     >  1:1378307/1‑91 (MQ=255)

                                                    aTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaaaa                                     >  1:3024391/1‑91 (MQ=255)

                                                      tCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATg                                   <  2:1501697/91‑1 (MQ=255)

                                                      tCAATTGGAAATTGAAATAAAGATGGCATCCAGTGGTCATCTTTTTTTTTTGTGTGAACATGGTCAATATGTATTATAATATTTGGAACTg                                   >  2:744340/1‑91 (MQ=255)

                                                       cAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGt                                  >  1:2812586/1‑91 (MQ=255)

                                                        aaTTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTa                                 >  1:2195344/1‑91 (MQ=255)

                                                        aaTTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTa                                 <  1:1155593/91‑1 (MQ=255)

                                                            tccaaTTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagata                             >  1:383738/4‑91 (MQ=255)

                                                             gAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagataa                            <  1:1166123/91‑1 (MQ=255)

                                                               aaTTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagataaga                          >  1:1236512/1‑91 (MQ=255)

                                                                aTTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagataagat                         >  1:1177383/1‑91 (MQ=255)

                                                                 ttGAAATAAAGATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgtt                        <  1:3394032‑M2/91‑66 (MQ=255)

                                                                  tGAAATAAAGATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgtta                       <  2:1871767‑M2/91‑67 (MQ=255)

                                                                  tGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAg                       <  1:820010/91‑1 (MQ=255)

                                                                   gAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAgg                      >  1:142816/1‑91 (MQ=255)

                                                                   gAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAgg                      >  1:2507496/1‑91 (MQ=255)

                                                                     aaTAAAGATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacga                    <  1:2298932‑M2/91‑70 (MQ=255)

                                                                     aaTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAt                    <  1:1460509/91‑1 (MQ=255)

                                                                      aTAAAGATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgat                   <  1:1730522‑M2/91‑71 (MQ=255)

                                                                      aTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAtt                   <  2:1970301/91‑1 (MQ=255)

                                                                      aTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAtt                   >  2:1822166/1‑91 (MQ=255)

                                                                      aTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAtt                   >  1:1664928/1‑91 (MQ=255)

                                                                      aTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAtt                   <  2:3361532/91‑1 (MQ=255)

                                                                         aaGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTaaa                >  2:2978967/1‑91 (MQ=255)

                                                                         aaGATGGCATTCAGTTGTCATCCTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTaaa                >  1:1771954/1‑91 (MQ=255)

                                                                         aaGATGGCATTCAGTTATCATCTTTTTTATTTGCGTGAAAATGGTAAATATGTATTATAATATTTGAAAATGTAGATAAAAAAAAATTaaa                <  2:3477016/91‑1 (MQ=255)

                                                                          aGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTaaaa               >  2:2539635/1‑91 (MQ=255)

                                                                          aGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTaaaa               >  2:2919857/1‑91 (MQ=255)

                                                                           gATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaa              <  2:1668458‑M2/91‑76 (MQ=255)

                                                                             tGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaatt            <  1:338613‑M2/91‑78 (MQ=255)

                                                                             tGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGt            <  2:589380/91‑1 (MQ=255)

                                                                             tGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGt            >  1:762864/1‑91 (MQ=255)

                                                                              ggCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGta           >  2:220197/1‑91 (MQ=255)

                                                                              ggCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGta           >  1:1086469/1‑91 (MQ=255)

                                                                               gCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGtaa          >  2:2704511/1‑91 (MQ=255)

                                                                                cATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGtaat         <  2:496292/91‑1 (MQ=255)

                                                                                 aTTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGtaata        >  1:3545251/1‑91 (MQ=255)

                                                                                  ttCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGtaataa       <  2:3626701/91‑1 (MQ=255)

                                                                                    cAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTAATAAAt     >  1:2368198/1‑91 (MQ=255)

                                                                                      gTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTAATAAATTa   >  1:2651564/1‑91 (MQ=255)

TTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTAATAAATTAA  >  USA300TCH1516_ALE/424941‑425118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.