BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	641988 =	198 (1.040)	17 (0.100)	13/144	NT	9.2%	intergenic (+7/+135)	yhdG_1/USA300HOU_RS03060	putative amino acid permease YhdG/hypothetical protein
*	?	USA300TCH1516_ALE	642033 =	157 (0.920)	17 (0.100)	13/144	NT	9.2%	intergenic (+52/+90)	yhdG_1/USA300HOU_RS03060	putative amino acid permease YhdG/hypothetical protein

Only 100 of 249 total aligned reads displayed.

GAATTAAGTCGCTTGATTTTAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGCTGAACCTTA  >  USA300TCH1516_ALE/641898‑642077

gaATTAAGTCGCTTGATTTTAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGa                                                                                           >  1:2919386/1‑91 (MQ=255)

gaATTAAGTCGCTTGATTTTAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGa                                                                                           >  2:1165872/1‑91 (MQ=255)

 tatttgttagaaatggctcagccctaactcttagcaattatatataaggttcagctgcctcgtcttaaatgtcaatttataatacaaaaaa                                                                                          <  1:749521‑M1/2‑1 (MQ=255)

 tatttgttagaaatggctcagccctaactcttagcaattatatataaggttcagctgcctcgtcttaaatgtcaatttataatacaaaaaa                                                                                          <  2:1053513‑M1/2‑1 (MQ=255)

 aaTTAAGTCGCTTGATTTTAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGaa                                                                                          <  1:482114/91‑1 (MQ=255)

     tgttagaaatggctcagccctaactcttagcaattatatataaggttcagctgcctcgtcttaaatgtcaatttataatacaaaaAATCGc                                                                                      >  2:1538370‑M1/86‑91 (MQ=255)

      gttagaaatggctcagccctaactcttagcaattatatataaggttcagctgcctcgtcttaaatgtcaatttataatacaaaaAATCGca                                                                                     <  1:1165872‑M1/7‑1 (MQ=255)

      aGTCGCTTGATTTTAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGca                                                                                     >  1:1854451/1‑91 (MQ=255)

        tCGCTTGATTTTAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGcaca                                                                                   >  2:2370314/1‑91 (MQ=255)

        tCGCTTGATTTTAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGcaca                                                                                   >  2:2369967/1‑91 (MQ=255)

          gCTTGATTTTAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAAt                                                                                 <  2:2261778/91‑1 (MQ=255)

              gATTTTAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAAc                                                                             <  1:2819431/91‑1 (MQ=255)

               aTTTTAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAAcc                                                                            <  1:590787/91‑1 (MQ=255)

                ttttAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACct                                                                           <  2:3761070/91‑1 (MQ=255)

                 tttAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACctt                                                                          >  1:592960/1‑91 (MQ=255)

                  ttAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACcttc                                                                         <  2:1493739/91‑1 (MQ=255)

                   tAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATATACcttct                                                                        <  1:1237741/91‑1 (MQ=255)

                    aaaTAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACcttctt                                                                       >  1:1565342/1‑91 (MQ=255)

                    aaaTAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACcttctt                                                                       <  1:3212645/91‑1 (MQ=255)

                     aaTAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCttcttc                                                                      <  2:2818257/91‑1 (MQ=255)

                     aaTAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCttcttc                                                                      >  2:567678/1‑91 (MQ=255)

                       tAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCAt                                                                    >  1:3575994/1‑91 (MQ=255)

                        aGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCAtt                                                                   >  2:2096009/1‑91 (MQ=255)

                        aGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCAtt                                                                   <  2:3145620/91‑1 (MQ=255)

                         gAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTc                                                                  >  1:7176/1‑91 (MQ=255)

                          aaGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCg                                                                 >  1:145473/1‑91 (MQ=255)

                             tGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAg                                                              >  2:2323341/1‑91 (MQ=255)

                             tGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAg                                                              >  1:3194115/1‑91 (MQ=255)

                             tGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAg                                                              <  1:176907/91‑1 (MQ=255)

                             tGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAg                                                              >  1:1053477/1‑91 (MQ=255)

                              gAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAgg                                                             >  1:2404006/1‑91 (MQ=255)

                              gAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAgg                                                             >  2:1418426/1‑91 (MQ=255)

                              gAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAgg                                                             <  1:1787540/91‑1 (MQ=255)

                               aaaaTGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGc                                                            <  2:794676/91‑1 (MQ=255)

                                aaaTGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCg                                                           >  2:2590148/1‑91 (MQ=255)

                                aaaTGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCg                                                           <  2:677120/91‑1 (MQ=255)

                                   tGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTAt                                                        >  1:1596183/1‑91 (MQ=255)

                                    gAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATc                                                       >  1:255531/1‑91 (MQ=255)

                                    aattatatataaggttcagctgcctcgtcttaaatgtcaatttacaatacaagaAGTCGCACAATAAACCTTCTTCATTCGGAGGCGTATc                                                       >  1:3084080‑M1/55‑91 (MQ=255)

                                     aaGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCg                                                      <  2:316154/91‑1 (MQ=255)

                                      ttatatataaggttcagctgcctcgtcttaaatgtcaatttataatacaaaaAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGt                                                     >  2:2685599‑M1/53‑91 (MQ=255)

                                      aGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGt                                                     >  1:2584555/1‑91 (MQ=255)

                                      aGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGt                                                     >  1:535130/1‑91 (MQ=255)

                                      aGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGt                                                     <  1:424198/91‑1 (MQ=255)

                                       tatatataaggttcagctgcctcgtcttaaatgtcaatttataatacaaaaAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTg                                                    >  2:1712492‑M1/52‑91 (MQ=255)

                                       tatatataaggttcagctgcctcgtcttaaatgtcaatttataatacaaaaAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTg                                                    >  1:2258138‑M1/52‑91 (MQ=255)

                                       gTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTg                                                    <  2:2172990/91‑1 (MQ=255)

                                       gTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTg                                                    <  2:3170560/91‑1 (MQ=255)

                                        ttGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGc                                                   >  2:1033719/1‑91 (MQ=255)

                                          gatgatATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGGGGCGTATCGTGCGa                                                 <  1:2774638/91‑1 (MQ=255)

                                          atataaggttcagctgcctcgtcttaaatgtcaatttataatacaaaaAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGa                                                 >  2:734682‑M1/49‑91 (MQ=255)

                                           atgatatgatTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGAt                                                >  1:3150217/1‑91 (MQ=255)

                                                atgatTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGAtttttt                                           >  1:90410/1‑91 (MQ=255)

                                                 tgatTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTg                                          >  2:3445200/1‑91 (MQ=255)

                                                 gttcagctgcctcgtcttaaatgtcaatttataatacaaaaAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTg                                          >  2:2109995‑M1/42‑91 (MQ=255)

                                                    ttGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGtat                                       >  2:2765469/1‑91 (MQ=255)

                                                    ttGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGtat                                       >  2:1828185/1‑91 (MQ=255)

                                                     tGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGtatt                                      <  2:3032356/91‑1 (MQ=255)

                                                     tGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGtatt                                      <  1:697609/91‑1 (MQ=255)

                                                         gaaCCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATaa                                  <  2:3521483/91‑1 (MQ=255)

                                                         gaaCCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATaa                                  <  1:2376345/91‑1 (MQ=255)

                                                          aaCGTGAAAGAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATaaa                                 <  1:3489522/91‑1 (MQ=255)

                                                          aaCCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATaaa                                 <  1:2017818/91‑1 (MQ=255)

                                                          aaCCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATaaa                                 <  1:2017773/91‑1 (MQ=255)

                                                           aCCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAAt                                >  2:2888004/1‑91 (MQ=255)

                                                            ccTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAAtt                               <  2:1622350/91‑1 (MQ=255)

                                                               gaaaaagaaaaaACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGAc                            <  2:1329750/91‑1 (MQ=255)

                                                                 aaaagaaaaaACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATGCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACAt                          <  1:3366668/91‑1 (MQ=255)

                                                                  aaagaaaaaACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACAtt                         >  2:3371905/1‑91 (MQ=255)

                                                                   aagaaaaaACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACAttt                        >  2:3857299/1‑91 (MQ=255)

                                                                   aagaaaaaACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACAttt                        <  2:3683012/91‑1 (MQ=255)

                                                                   aagaaaaaACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACAttt                        >  2:3304115/1‑91 (MQ=255)

                                                                     gaaaaaACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTaa                      <  1:3410590/91‑1 (MQ=255)

                                                                      aaaaaaCTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAg                     <  2:2121622/91‑1 (MQ=255)

                                                                      aaaaaaCTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAg                     <  1:2625699/91‑1 (MQ=255)

                                                                      aaaaaaCTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAg                     >  1:775973/1‑91 (MQ=255)

                                                                        aaaaCTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGAc                   <  2:2050936/91‑1 (MQ=255)

                                                                         aaaCTAAATAATAAATGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCAATTTTTTGTATTATAAATTGACATTTAAGACg                  >  1:3310659/1‑91 (MQ=255)

                                                                         aaaCTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGAGATTTTTTGTATTATAAATTGACATTTAAGACg                  >  2:3265209/1‑91 (MQ=255)

                                                                            cTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAgg               <  1:3749972/91‑1 (MQ=255)

                                                                             tAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGc              >  1:1901668/1‑91 (MQ=255)

                                                                             tAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGc              >  1:1897000/1‑91 (MQ=255)

                                                                              aaaTAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCa             >  2:1952757/1‑91 (MQ=255)

                                                                               aataatAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAg            >  2:2442803/1‑91 (MQ=255)

                                                                               aataatAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAg            >  1:1033125/1‑91 (MQ=255)

                                                                                ataataAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGc           <  2:585979/91‑1 (MQ=255)

                                                                                ataataAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGc           <  1:304994/91‑1 (MQ=255)

                                                                                ataataAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGc           <  1:1735390/91‑1 (MQ=255)

                                                                                 taataaAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGCt          >  2:2076393/1‑91 (MQ=255)

                                                                                 taataaAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGCt          <  2:1863532/91‑1 (MQ=255)

                                                                                 taataaAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGCt          >  1:3875223/1‑91 (MQ=255)

                                                                                  aataaAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGAtttt                                             <  1:1433938/55‑1 (MQ=255)

                                                                                   ataaAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGCTGa        <  2:321222/91‑1 (MQ=255)

                                                                                    taaAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGCTGaa       >  1:3770115/1‑91 (MQ=255)

                                                                                      aaaGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGCTGAAcc     >  2:1014777/1‑91 (MQ=255)

                                                                                        aGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGCTGAACCtt   >  2:2097344/1‑91 (MQ=255)

                                                                                        aGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGCTGAACCtt   <  1:2286869/91‑1 (MQ=255)

                                                                                        aGAATCGCACAATAAACCTTCTTCATTCGGAGGAGTATCGTGCGATTTTTTGTATTATAACTCGACATTTAAGACGAGGCAGCCGAACCtt   >  1:1286586/1‑91 (MQ=255)

                                                                                         gAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGCTGAACCTta  <  2:3243859/91‑1 (MQ=255)

                                                                                         gAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGCTGAACCTta  <  2:921812/91‑1 (MQ=255)

GAATTAAGTCGCTTGATTTTAAATAGAAGTGAAAATGAAGTTGATGATATGATTGAAGAACCTGAAAAAGAAAAAACTAAATAATAAAAGAATCGCACAATAAACCTTCTTCATTCGGAGGCGTATCGTGCGATTTTTTGTATTATAAATTGACATTTAAGACGAGGCAGCTGAACCTTA  >  USA300TCH1516_ALE/641898‑642077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.