| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 669094 | 189 (0.990) | 28 (0.170) | 15/142 | NT | 12.6% | intergenic (+68/‑7) | adh/USA300TCH1516_00602 | Alcohol dehydrogenase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 669118 | 222 (1.320) | coding (18/108 nt) | USA300TCH1516_00602 | hypothetical protein | |||||
Only 100 of 309 total aligned reads displayed.
GTAGAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTG > USA300TCH1516_ALE/669004‑669184 | aGAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGt > 1:116281/1‑91 (MQ=255) gAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGtt > 2:1961156/1‑91 (MQ=255) aTGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGtttt < 2:978316/91‑1 (MQ=255) aTGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGtttt < 2:2965374/91‑1 (MQ=255) tGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTc > 2:3652580/1‑91 (MQ=255) ggTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCa < 2:376030/91‑1 (MQ=255) ttattaAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGattttcact < 1:1746273‑M1/91‑10 (MQ=255) ttattaAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATg < 2:1630255/91‑1 (MQ=255) ttattaAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATg < 2:1752370/91‑1 (MQ=255) taAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAg < 1:2166522/91‑1 (MQ=255) aaaTTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGa > 2:1361770/1‑91 (MQ=255) ttttAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAg > 2:1714694/1‑91 (MQ=255) tttAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGt < 2:3022900/91‑1 (MQ=255) tttAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGt > 1:309357/1‑91 (MQ=255) tAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGattttcactatctttcatga < 2:2687748‑M1/91‑21 (MQ=255) tAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGa > 1:52348/1‑91 (MQ=255) tAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGa > 1:3241976/1‑91 (MQ=255) aaaaaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGaa > 1:2770036/1‑91 (MQ=255) aaaaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGattttcactatctttcgtgaaa < 2:2772868‑M1/91‑23 (MQ=255) aaaaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGaaa > 1:1571118/1‑91 (MQ=255) aaaaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGaaa < 1:661731/91‑1 (MQ=255) aaaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGattttcactatctttcatgaaaa < 1:2185859‑M1/91‑24 (MQ=255) aaaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGaaaa > 1:2543784/1‑91 (MQ=255) aaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGattttcactatctttcatgaaaac < 2:201560‑M1/91‑25 (MQ=255) aaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAAt > 2:3414416/1‑91 (MQ=255) atatCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGattttcactatctttcatgaaaacc < 2:3556113‑M1/91‑26 (MQ=255) atatCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATc < 2:2884858‑M2/91‑2 (MQ=255) tatCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGattttcactatctttcatgaaaacct < 2:753201‑M1/91‑27 (MQ=255) tatCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGattttcactatctttcatgaaaacct < 2:1244285‑M1/91‑27 (MQ=255) tatCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATct > 2:2782586‑M2/1‑89 (MQ=255) tatCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATct > 1:2034501‑M2/1‑89 (MQ=255) aaCTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtg < 2:2304019‑M2/91‑7 (MQ=255) cTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGattttcactatctttcatgaaaacctcgtgtt < 2:1425671‑M1/91‑33 (MQ=255) cTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtgtt < 1:2960096‑M2/91‑9 (MQ=255) tGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtgttt > 1:2135685‑M2/1‑82 (MQ=255) tGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtgttt > 2:580034‑M2/1‑82 (MQ=255) gACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCGAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGtttt < 1:1083532/91‑1 (MQ=255) gACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGtttt > 2:2809261/1‑91 (MQ=255) aCTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGttttt > 1:1924833/1‑91 (MQ=255) atataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTgg < 1:1783748/91‑1 (MQ=255) gATAAATAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTg > 1:3012759/1‑91 (MQ=255) gATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTg > 1:3333545/1‑91 (MQ=255) aTAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGa > 2:656642/1‑91 (MQ=255) tAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGattttcactatctttcatgaaaacctcgtgtttgattataatgat < 1:3808969‑M1/91‑46 (MQ=255) agaagGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGgtg < 1:2818279/91‑1 (MQ=255) agGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttg < 1:2470215/91‑1 (MQ=255) ggTAGTGCTCTGTACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCGCGTGTTTTTTGGTTTTGAGGtgttgt < 2:3221269/91‑1 (MQ=255) ggTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttgt > 2:337552/1‑91 (MQ=255) ggTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTATTTTTTGGTTTTGAGGtgttgt > 2:3121645/1‑91 (MQ=255) aGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGttgtttg > 1:2915505/1‑91 (MQ=255) tGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTa > 2:1004740/1‑91 (MQ=255) gCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAt > 2:1583582/1‑91 (MQ=255) ctctGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAtt < 1:3131176/91‑1 (MQ=255) ctGAACACTATGATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAtttt < 1:3523967/91‑1 (MQ=255) ctGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAtttt > 1:579998/1‑91 (MQ=255) acacTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATaa < 2:2650281/91‑1 (MQ=255) acacTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATaa > 1:3815329/1‑91 (MQ=255) cacTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttc < 1:3568497‑M2/91‑43 (MQ=255) cacTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATaaa < 2:318510/91‑1 (MQ=255) acTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATaaaa < 2:1924833/91‑1 (MQ=255) cTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAAt < 1:1625632/91‑1 (MQ=255) tATCATTATAATCAAACACGAGGTTTTCACGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATg < 2:636433/91‑1 (MQ=255) aTCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttcttta < 2:490077‑M2/91‑47 (MQ=255) aTCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttcttta < 1:3808991‑M2/91‑47 (MQ=255) tCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttat < 2:285901‑M2/91‑48 (MQ=255) tCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGc > 1:1196593/1‑91 (MQ=255) cATTATAATCAAACACGAGGTTTAGATGAAAGATAGTGAAAATGTCGTGTGTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCt < 2:3603018/91‑1 (MQ=255) aTTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCtt < 1:3159824/91‑1 (MQ=255) ttATAATCAAACACGAGGTTTTCATGAAAGATCGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTa > 2:3811556/1‑91 (MQ=255) ttATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCttt > 2:738088/1‑90 (MQ=255) ttATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTa < 2:855832/91‑1 (MQ=255) ataATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGTTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACa > 2:517143/1‑91 (MQ=255) aTCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACatat < 1:1390717/91‑1 (MQ=255) tCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACatata < 2:1129727/91‑1 (MQ=255) tCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACatata < 2:1488059/91‑1 (MQ=255) tCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACatata < 2:422447/91‑1 (MQ=255) cAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACatatat < 1:2344913/91‑1 (MQ=255) aaaCACGAGattttcactatctttcatgaaaacctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtca > 1:2135532‑M1/1‑9 (MQ=255) aaaCACGAGattttcactatctttcatgaaaacctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtca < 2:82013‑M1/91‑83 (MQ=255) aaaCACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATg > 2:2482966/1‑91 (MQ=255) acacGAGattttcactatctttcatgaaaacctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagt < 2:3665273‑M1/91‑85 (MQ=255) acacGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGaa > 1:2189362/1‑91 (MQ=255) acacGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGaa > 1:858723/1‑91 (MQ=255) acacGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGaa > 1:2116086/1‑91 (MQ=255) acacGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGaa < 1:865375/91‑1 (MQ=255) acacGAGGTTTTCATGAAAGATAGTGAAAATCACGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATCTCTGaa > 1:3675413/1‑91 (MQ=255) cacGAGattttcactatctttcatgaaaacctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagtt < 2:401785‑M1/91‑86 (MQ=255) cacGAGattttcactatctttcatgaaaacctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagtt > 1:1858910‑M1/1‑6 (MQ=255) cacGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAg < 2:1598682/91‑1 (MQ=255) cacGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAg > 1:1323621/1‑91 (MQ=255) cacGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAg < 1:1667122/91‑1 (MQ=255) acGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGc < 1:3412918/91‑1 (MQ=255) acGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGc < 2:2244398/91‑1 (MQ=255) gagattttcactatctttcatgaaaacctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgat > 2:1299150‑M1/1‑3 (MQ=255) gagattttcactatctttcatgaaaacctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgat > 2:3290560‑M1/1‑3 (MQ=255) gAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGt < 2:1554543/91‑1 (MQ=255) gAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGt > 2:825871/1‑91 (MQ=255) aGGTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgata < 2:763136‑M2/91‑66 (MQ=255) ggTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTg < 2:2138049/91‑1 (MQ=255) ggTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTg > 2:2620768/1‑91 (MQ=255) | GTAGAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTG > USA300TCH1516_ALE/669004‑669184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |