| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 669094 | 189 (0.990) | 28 (0.170) | 15/142 | NT | 12.6% | intergenic (+68/‑7) | adh/USA300TCH1516_00602 | Alcohol dehydrogenase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 669118 | 222 (1.320) | coding (18/108 nt) | USA300TCH1516_00602 | hypothetical protein | |||||
Only 100 of 298 total aligned reads displayed.
AATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAA > USA300TCH1516_ALE/669028‑669208 | aaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAAt < 2:2639404/91‑1 (MQ=255)aaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAAt > 2:3412918/1‑91 (MQ=255) tatCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATct > 2:2782586‑M2/1‑89 (MQ=255) atCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctc > 2:3290560‑M2/1‑88 (MQ=255) atCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctc > 2:1299150‑M2/1‑88 (MQ=255) aaCTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtg > 1:1858910‑M2/1‑85 (MQ=255) aaCTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtg < 2:401785‑M2/91‑7 (MQ=255) aCTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtgt < 2:3665273‑M2/91‑8 (MQ=255) tGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtgttt > 1:2135685‑M2/1‑82 (MQ=255) gACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCGAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑tttt < 1:1083532/91‑1 (MQ=255) cTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑tttttt < 2:2279779/91‑1 (MQ=255) atataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTgg < 1:354480/91‑1 (MQ=255) atataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTgg < 2:1101968/91‑1 (MQ=255) tataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGt < 1:3573038/91‑1 (MQ=255) tataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGt > 1:1291553/1‑91 (MQ=255) tataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGt > 1:2988429/1‑91 (MQ=255) tataGATAAAGAAGGTAATGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGt < 1:3322349/91‑1 (MQ=255) gATAAAGAAGGTAGTGCTCTGAACACTATGATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTg < 1:3107804/91‑1 (MQ=255) gATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTg > 1:650763/1‑91 (MQ=255) gATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTg < 2:1386701/91‑1 (MQ=255) agaagGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGgtg < 1:2818279/91‑1 (MQ=255) agGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGtgttg < 1:2470215/91‑1 (MQ=255) agGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGtgttg > 2:800978/1‑91 (MQ=255) gTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTgttgtt > 1:318510/1‑91 (MQ=255) aGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGttgtttg > 1:2915505/1‑91 (MQ=255) tGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTa > 2:1004740/1‑91 (MQ=255) ctctGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTAtt < 1:3131176/91‑1 (MQ=255) ctctGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TGTGTTGGTTTTGAGGTGTTGTTTGTAtt < 2:273503/91‑1 (MQ=255) ctGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTAtttt < 2:659963/91‑1 (MQ=255) acTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATaaaa < 2:607862/91‑1 (MQ=255) acTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATaaaa < 2:1924833/91‑1 (MQ=255) cTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAAt < 2:1583734/91‑1 (MQ=255) cTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAAt > 1:3357355/1‑91 (MQ=255) cTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAAt < 1:1625543/91‑1 (MQ=255) cTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAAt > 2:445850/1‑91 (MQ=255) aTCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttcttta < 1:3808991‑M2/91‑47 (MQ=255) tCATTATAATCATACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGc < 2:3219200/91‑1 (MQ=255) tCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttat < 2:285901‑M2/91‑48 (MQ=255) aTTATAATCAAACACGAGGTTTTCATGAAAGATAGTGCAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCtt > 1:1653689/1‑91 (MQ=255) ttATAATCAAACACGAGGTTTTCATGAAAGATCGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTa > 2:3811556/1‑91 (MQ=255) ttATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTa > 2:946498/1‑91 (MQ=255) ttATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTa > 2:646073/1‑91 (MQ=255) tataATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTAc > 2:3369868/1‑91 (MQ=255) ataATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACa < 2:561673/91‑1 (MQ=255) taATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACat > 1:3833840/1‑91 (MQ=255) aaTCAAACACGATGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACata < 2:498441/91‑1 (MQ=255) aTCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACatat < 2:1620948/91‑1 (MQ=255) tCAAACACGAGGTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagt < 1:2186092‑M2/91‑57 (MQ=255) tCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACatata < 2:1488059/91‑1 (MQ=255) cAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACatatat < 1:2344913/91‑1 (MQ=255) aaaCACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATg > 1:2167765/1‑91 (MQ=255) aaCACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGa < 1:194340/91‑1 (MQ=255) acacGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGaa > 1:2118125/1‑91 (MQ=255) acacGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGaa < 1:865375/91‑1 (MQ=255) acacGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGaa > 1:858723/1‑91 (MQ=255) acacGAGGTTTTCATGAAAGATAGTGAAAATCACGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATCTCTGaa > 1:3675413/1‑91 (MQ=255) acGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGc < 1:3412918/91‑1 (MQ=255) acGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGc < 2:2122757/91‑1 (MQ=255) acGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGc < 2:2244319/91‑1 (MQ=255) cGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCg < 1:1697595/91‑1 (MQ=255) gAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGt > 2:825871/1‑91 (MQ=255) gAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGt < 2:260347/91‑1 (MQ=255) aGGTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgata < 2:753201‑M2/91‑66 (MQ=255) aGGTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgata < 2:1244285‑M2/91‑66 (MQ=255) aGGTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgata < 1:1168157‑M2/91‑66 (MQ=255) aGGTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgata < 1:1374074‑M2/91‑66 (MQ=255) ggTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgatat < 2:3556113‑M2/91‑67 (MQ=255) gTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgatatt < 2:201560‑M2/91‑68 (MQ=255) gTTTTCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgatatt < 1:2751844‑M2/91‑68 (MQ=255) gTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGa < 1:2239259/91‑1 (MQ=255) gTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGa > 2:2201269/1‑91 (MQ=255) ttttCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgatattt < 1:1775061‑M2/91‑69 (MQ=255) ttttCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgatattt < 2:2361010‑M2/91‑69 (MQ=255) ttttCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGAt > 2:2919701/1‑91 (MQ=255) tttCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGAtt < 1:3138590/91‑1 (MQ=255) tCATGAAAGATAGTGAAAATctcgtgtttgattataatgatagtgttcagagcactaccttctttatctatatagtcagttgatattttta < 2:2687748‑M2/91‑72 (MQ=255) cATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTg < 1:2042631/38‑1 (MQ=255) aTGAAAGATAGTGAAAATCTCGTGTTTTTTTGGTTTTGAGATGTTGTATGTATTTTATAAAATGGCTCACATATATGAAGCATTGATTAAg > 2:3606818/1‑91 (MQ=255) aTGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGt > 1:2557978/1‑91 (MQ=255) aTGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGt > 1:48148/1‑91 (MQ=255) aTGAAAGATAGTGAAAATCACGTG‑TTTTATGATTTTGAGGTGTTGTTTGTATTCTATAAAATGGCTTACATATATGAAGCGTTGATTACGt > 2:848262/1‑91 (MQ=255) tGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTa > 2:1572604/1‑91 (MQ=255) tGAAAGATAGTGAAAAGCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTa < 2:2974954/91‑1 (MQ=255) gAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTAt > 1:3707945/1‑91 (MQ=255) gAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTAt < 2:2654280/91‑1 (MQ=255) aaGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGGGGTGTTGTTTGTATTTTATAAAATGACTTACATATATGAAGCGTTGATTAAGTATgg < 1:3446035/91‑1 (MQ=255) aaGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATgg < 1:262989/91‑1 (MQ=255) aGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGa < 1:1469467/91‑1 (MQ=255) aGTGAATATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTg > 1:3020371/1‑91 (MQ=255) aGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTGCATATATGAAGCGTTGATTAAGTATGGAATTg > 1:1792864/1‑91 (MQ=255) aGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTg > 2:3227634/1‑91 (MQ=255) aGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTg > 2:2825158/1‑91 (MQ=255) gTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTGCATATATGAAGCGTTGATTAAGTATGGAATTGt < 2:1792864/91‑1 (MQ=255) gTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGt < 2:1170521/91‑1 (MQ=255) gTGAAAATCTCGTG‑TTTTTTGGCTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGt < 2:3127443/91‑1 (MQ=255) tGAAAATCTCGTG‑TTTTTTGGTTTTGTGGTGATGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGtt > 2:2411075/1‑91 (MQ=255) gAAAATCTCGTG‑TTTTTTGTTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGtta > 2:1871879/1‑91 (MQ=255) aaaaTCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGttaa > 1:1111728/1‑91 (MQ=255) aaaTCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGttaat < 1:825871/91‑1 (MQ=255) aaaTCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGttaat < 2:3032882/91‑1 (MQ=255) | AATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTG‑TTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAA > USA300TCH1516_ALE/669028‑669208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |