| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 682222 = | 178 (0.930) | 11 (0.070) | 9/140 | NT | 6.1% | intergenic (‑64/+45) | USA300TCH1516_00616/rcsF_2 | hypothetical protein/Outer membrane lipoprotein RcsF |
| ? | USA300TCH1516_ALE | 682264 = | 186 (1.120) | intergenic (‑106/+3) | USA300TCH1516_00616/rcsF_2 | hypothetical protein/Outer membrane lipoprotein RcsF | |||||
Only 100 of 319 total aligned reads displayed.
TTCTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTT > USA300TCH1516_ALE/682132‑682311 | aatatgaagaagattctaatattgatgctgaaaagtttgagaaatataataaaccagtttatgaagaaaataatatgaaaaaataaagaAt > 1:3073793‑M1/90‑91 (MQ=255) aatatgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaaaaaaaaaaaaaaataaagaAt > 2:691433‑M1/90‑91 (MQ=255) cTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATC < 2:763828‑M1/91‑1 (MQ=255) ttACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAA > 2:269795‑M1/1‑91 (MQ=255) atgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCaa < 1:2101556‑M1/5‑1 (MQ=255) tACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAAC < 2:1535798‑M1/91‑1 (MQ=255) gaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACt < 2:390716‑M1/7‑1 (MQ=255) aCGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACT > 1:3713250‑M1/1‑91 (MQ=255) aCGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACT > 1:1819757‑M1/1‑91 (MQ=255) aCGTTTTTTTCTTTTTTTCATGCATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACT < 2:3119606‑M1/91‑1 (MQ=255) aagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTc < 1:1459906‑M1/8‑1 (MQ=255) agaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTcc < 1:3048488‑M1/9‑1 (MQ=255) gaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTccc > 2:483161‑M1/82‑91 (MQ=255) tttttctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGa < 1:2260369/91‑1 (MQ=255) ttttctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGAt > 2:335580/1‑91 (MQ=255) ttctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGAtgg < 1:2167652/91‑3 (MQ=255) ttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATc > 1:3483627/1‑91 (MQ=255) tttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGCATATATGTTCATCAACTCCCGATACCATCGCt > 1:3310590/1‑91 (MQ=255) ttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTa > 1:2899205/1‑91 (MQ=255) ttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTa > 2:3531695/1‑91 (MQ=255) gatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTaaa > 1:384300‑M1/67‑91 (MQ=255) cATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCtatacgctttagcga < 2:2564688‑M1/91‑16 (MQ=255) tttttatTCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGc > 2:3855241/5‑91 (MQ=255) tGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGc > 1:632611/1‑91 (MQ=255) gTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCg > 1:1293689/1‑91 (MQ=255) gTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCg > 2:1020590/1‑91 (MQ=255) atatCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGta < 2:1046121/91‑1 (MQ=255) tatCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGtat > 2:3795919/1‑91 (MQ=255) tcctccTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCtatacgctttagcgatggtatcg < 2:3699175‑M1/91‑24 (MQ=255) tcctccTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAg < 1:3441154‑M2/91‑2 (MQ=255) tcctccTTTACTTGTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCtatacgctttagcgatggtatcg < 2:2892141‑M1/91‑24 (MQ=255) cctcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCtatacgctttagcgatggtatcgg < 1:771486‑M1/91‑25 (MQ=255) cctcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAgg < 2:1929832‑M2/91‑3 (MQ=255) ctcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCtatacgctttagcgatggtatcggg < 1:2621010‑M1/91‑26 (MQ=255) tcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAggga > 1:2862429‑M2/1‑87 (MQ=255) tcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAggga > 2:1248406‑M2/1‑87 (MQ=255) tcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAggga < 1:958169‑M2/91‑5 (MQ=255) tcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAggga < 1:532392‑M2/91‑5 (MQ=255) tttACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAgggagtt < 2:1719095‑M2/91‑8 (MQ=255) tttACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAgggagtt < 1:2412213‑M2/91‑8 (MQ=255) cttaCTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAgggagtt < 1:2674737‑M2/90‑8 (MQ=255) ttACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAgggagttg < 1:1218978‑M2/91‑9 (MQ=255) gagaaagataataaactagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTg > 2:2972372‑M1/52‑91 (MQ=255) gaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAt > 1:3119753‑M1/50‑91 (MQ=255) aCTTGTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCtatacgctttagcgatggtatcgggagttgat < 1:3232962‑M1/91‑33 (MQ=255) cTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAtt > 2:160180/1‑91 (MQ=255) ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATGAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc > 2:3418336/1‑91 (MQ=255) ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc > 2:1552679/1‑91 (MQ=255) ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc < 1:2509784/91‑1 (MQ=255) tttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCt < 1:2335853/91‑1 (MQ=255) ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt < 1:443260/91‑1 (MQ=255) ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt < 1:1699267/91‑1 (MQ=255) ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt < 2:2454573/91‑1 (MQ=255) tAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCttt > 2:451157/1‑91 (MQ=255) aaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCtatacgctttagcgatggtatcgggagttgatgaacatat < 1:1556074‑M1/91‑41 (MQ=255) aaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtt < 1:2931757/91‑1 (MQ=255) aaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtt < 2:1768739/91‑1 (MQ=255) aGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttt > 2:2101556/1‑91 (MQ=255) aGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttt > 2:1459906/1‑91 (MQ=255) aGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACAATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttta > 2:3841087/1‑90 (MQ=255) ggTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttttt < 1:3174290/91‑1 (MQ=255) ggTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttttt > 2:708322/1‑91 (MQ=255) ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc < 1:2005609/91‑1 (MQ=255) ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc < 2:1158372/91‑1 (MQ=255) tatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttttt < 1:2439160/89‑1 (MQ=255) atttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCat > 1:1780133/1‑91 (MQ=255) tttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCata > 2:733191/1‑91 (MQ=255) tttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCata > 1:400991/1‑91 (MQ=255) ttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCatat < 1:1597194/91‑1 (MQ=255) ataAAATAAGTTATAAGAGGATATCTGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCAtatta > 2:2522077/1‑91 (MQ=255) ataAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCAtatta > 2:1884411/1‑91 (MQ=255) taAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCAtattat < 2:3319552/91‑1 (MQ=255) aaaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATattatt > 1:2021807/1‑91 (MQ=255) aaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTAttt > 1:265479/1‑91 (MQ=255) aaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTAtttt > 2:85651/1‑91 (MQ=255) aTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttc < 2:2143275/91‑1 (MQ=255) aaGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttctt < 1:3364590/91‑1 (MQ=255) aaGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttctt < 1:83808/91‑1 (MQ=255) aGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttcttc > 1:1013810/1‑91 (MQ=255) ttATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCAt < 2:204776/91‑1 (MQ=255) ataAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaa > 2:3647122/1‑91 (MQ=255) ataAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaa < 2:811908/91‑1 (MQ=255) taAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaaa > 2:2833256/1‑91 (MQ=255) aaGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAAc < 2:357360/91‑1 (MQ=255) agagGATATATGTTCATCAACTCCCtatacgctttagcgatggtatctggagttgatgaacatatatcctcttataacttattttataaat < 2:1674257‑M1/91‑67 (MQ=255) gagGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTg > 1:610052/1‑91 (MQ=255) gATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGtt < 1:2075269/91‑1 (MQ=255) atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt < 2:2292110/91‑1 (MQ=255) atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt > 2:1383309/1‑91 (MQ=255) atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt < 1:1675299/91‑1 (MQ=255) tatatGTTCATCAACTCCCGATACCGTCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTtta < 1:3605479/91‑1 (MQ=255) atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat < 2:51359/91‑1 (MQ=255) tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat > 1:2700597/1‑91 (MQ=255) tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat > 1:296609/1‑91 (MQ=255) tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat > 1:1887542/1‑91 (MQ=255) gTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATc > 2:2785786/1‑91 (MQ=255) ttCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGTTTTATTATCt > 2:2430005/1‑91 (MQ=255) ttCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCt < 2:2643146/91‑1 (MQ=255) tcatcaACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCtt > 1:2235721/1‑91 (MQ=255) catcaACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCttt < 1:2649280/91‑1 (MQ=255) | TTCTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTT > USA300TCH1516_ALE/682132‑682311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |