BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	682222 =	178 (0.930)	11 (0.070)	9/140	NT	6.1%	intergenic (‑64/+45)	USA300TCH1516_00616/rcsF_2	hypothetical protein/Outer membrane lipoprotein RcsF
*	?	USA300TCH1516_ALE	682264 =	186 (1.120)	11 (0.070)	9/140	NT	6.1%	intergenic (‑106/+3)	USA300TCH1516_00616/rcsF_2	hypothetical protein/Outer membrane lipoprotein RcsF

Only 100 of 306 total aligned reads displayed.

CTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTA  >  USA300TCH1516_ALE/682174‑682354

cTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAtt                                                                                            <  1:2385253/91‑1 (MQ=255)

cTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAtt                                                                                            >  2:554202/1‑91 (MQ=255)

 ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATGAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc                                                                                           >  2:3418336/1‑91 (MQ=255)

 ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc                                                                                           >  1:3732803/1‑91 (MQ=255)

 ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc                                                                                           <  1:2509784/91‑1 (MQ=255)

   ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                                                                         <  1:1698170/91‑1 (MQ=255)

   ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                                                                         >  1:2923158/1‑91 (MQ=255)

   ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                                                                         <  2:2454573/91‑1 (MQ=255)

    tAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGTAGTTGATTCttt                                                                                        <  1:2978043/91‑1 (MQ=255)

    tAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCttt                                                                                        >  2:1079891/1‑91 (MQ=255)

     aaaaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTa                                                                                       >  1:1243786/1‑91 (MQ=255)

      aaaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAt                                                                                      <  2:3276422/91‑1 (MQ=255)

       aaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtt                                                                                     <  1:2933153/91‑1 (MQ=255)

       aaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtt                                                                                     <  1:2094071/91‑1 (MQ=255)

         aGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttt                                                                                   >  2:1459906/1‑91 (MQ=255)

         aGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttt                                                                                   <  2:474287/91‑1 (MQ=255)

         aGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACAATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttta                                                                                   >  2:3841087/1‑90 (MQ=255)

          ggTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttttt                                                                                  >  2:708322/1‑91 (MQ=255)

           gTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttttt                                                                                 <  2:3692265/91‑1 (MQ=255)

           gTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCAGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttttt                                                                                 >  1:3072255/1‑91 (MQ=255)

            ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc                                                                                <  1:2005609/91‑1 (MQ=255)

             tatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCa                                                                               <  2:3595102/91‑1 (MQ=255)

              atttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCat                                                                              >  1:1780133/1‑91 (MQ=255)

               tttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCata                                                                             >  2:733191/1‑91 (MQ=255)

                ttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCatat                                                                            <  2:1683729/91‑1 (MQ=255)

                 tataAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCAtatt                                                                           <  1:1513892/91‑1 (MQ=255)

                  ataAAATAAGTTATAAGAGGATATCTGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCAtatta                                                                          >  2:2522077/1‑91 (MQ=255)

                   taAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCAtattat                                                                         <  2:3319637/91‑1 (MQ=255)

                    aaaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATattatt                                                                        >  1:1984605/1‑91 (MQ=255)

                     aaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTAttt                                                                       <  1:2621342/91‑1 (MQ=255)

                     aaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTAttt                                                                       >  1:265479/1‑91 (MQ=255)

                       aTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttc                                                                     <  2:2143275/91‑1 (MQ=255)

                         aaGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttctt                                                                   <  1:83780/91‑1 (MQ=255)

                          aGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttcttc                                                                  >  1:1013810/1‑91 (MQ=255)

                           gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa                                                                 >  1:2169313/1‑91 (MQ=255)

                            ttATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCAt                                                                <  2:154532/91‑1 (MQ=255)

                              ataAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaa                                                              <  2:811908/91‑1 (MQ=255)

                                  gagGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTg                                                          >  1:610052/1‑91 (MQ=255)

                                   agGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTgg                                                         <  2:2841166/91‑1 (MQ=255)

                                     gATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGtt                                                       >  2:1873561/1‑91 (MQ=255)

                                      atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt                                                      <  1:1675299/91‑1 (MQ=255)

                                      atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt                                                      <  2:837827/91‑1 (MQ=255)

                                        atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat                                                    <  2:86063/91‑1 (MQ=255)

                                        atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat                                                    <  1:3136639/91‑1 (MQ=255)

                                         tatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatt                                                   >  2:2801329/1‑91 (MQ=255)

                                          atGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatta                                                  >  2:2567546/1‑91 (MQ=255)

                                           tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaaa                                                             <  2:2305687/79‑1 (MQ=255)

                                           tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaaa                                                             >  1:2305687/1‑79 (MQ=255)

                                           tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat                                                 >  1:411928/1‑91 (MQ=255)

                                           tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat                                                 >  2:1568750/1‑91 (MQ=255)

                                           tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat                                                 >  1:2700597/1‑91 (MQ=255)

                                           aaagaatcaactccctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTCCATATTATTTTCTTGATAAACTGGTTtattat                                                 >  1:3322925‑M2/48‑91 (MQ=255)

                                              tcatcaACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCtt                                              >  1:2235721/1‑91 (MQ=255)

                                               catcaACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCttt                                             >  2:1884956/1‑91 (MQ=255)

                                                 TCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTtct                                           <  1:3332338‑M1/91‑1 (MQ=255)

                                                   aactccctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCa                                         >  1:2124781‑M2/40‑91 (MQ=255)

                                                   AACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCa                                         <  2:3033565‑M1/91‑1 (MQ=255)

                                                   AACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCa                                         >  2:400991‑M1/1‑91 (MQ=255)

                                                    ACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCaa                                        <  1:1739719‑M1/91‑1 (MQ=255)

                                                    ACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCaa                                        <  1:1488192‑M1/91‑1 (MQ=255)

                                                     CTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCaaa                                       <  2:2942954‑M1/91‑1 (MQ=255)

                                                     CTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCaaa                                       <  2:211541‑M1/91‑1 (MQ=255)

                                                     CTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCaaa                                       <  2:204100‑M1/91‑1 (MQ=255)

                                                     CTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCaaa                                       <  1:1078953‑M1/91‑1 (MQ=255)

                                                       CCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACt                                     >  2:2424242‑M1/1‑91 (MQ=255)

                                                        cctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtt                                    >  1:309946‑M2/35‑91 (MQ=255)

                                                        CCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtt                                    <  1:56867‑M1/91‑1 (MQ=255)

                                                        CCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtt                                    <  2:1488145‑M1/91‑1 (MQ=255)

                                                         ctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACttt                                   >  2:3535375‑M2/34‑91 (MQ=255)

                                                         CGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACttt                                   <  2:1166408‑M1/91‑1 (MQ=255)

                                                          gATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtttt                                  >  2:3745404/1‑91 (MQ=255)

                                                           aTACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTc                                 >  1:397344/1‑91 (MQ=255)

                                                             aCCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAg                               <  1:970434/91‑1 (MQ=255)

                                                             aCCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAg                               <  2:1243786/91‑1 (MQ=255)

                                                               cATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCa                             <  1:733191/91‑1 (MQ=255)

                                                                 tttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATc                           >  1:384300‑M2/26‑91 (MQ=255)

                                                                 tCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATc                           <  1:2016895/91‑1 (MQ=255)

                                                                  cGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATACACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCa                          >  1:1576879/1‑91 (MQ=255)

                                                                  cGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCa                          >  2:14416/1‑91 (MQ=255)

                                                                    cTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAat                        <  2:2638142/91‑1 (MQ=255)

                                                                    cTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAat                        >  2:1851869/1‑91 (MQ=255)

                                                                     tAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAata                       >  2:2599871/1‑91 (MQ=255)

                                                                        aGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTa                    <  2:1381565/91‑1 (MQ=255)

                                                                        aGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTa                    >  1:2441340/1‑91 (MQ=255)

                                                                        aGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTa                    <  1:3673337/91‑1 (MQ=255)

                                                                        aGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTa                    >  1:1434933/1‑91 (MQ=255)

                                                                         gCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAg                   >  1:49069/1‑91 (MQ=255)

                                                                         gCGTATAGGGAGTTGATTCTTTATTATTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAg                   >  1:3203905/1‑91 (MQ=255)

                                                                          cGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGa                  <  2:51299/91‑1 (MQ=255)

                                                                          cGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGa                  <  2:1819556/91‑1 (MQ=255)

                                                                            tataGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAt                <  2:3583353/91‑1 (MQ=255)

                                                                            tataGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAt                >  1:161194/1‑91 (MQ=255)

                                                                              taGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtct              <  1:3588859/91‑1 (MQ=255)

                                                                                 ggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtcttct           <  1:3048488‑M2/82‑1 (MQ=255)

                                                                                  gagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATcttctt          >  1:1836250‑M2/9‑91 (MQ=255)

                                                                                   agttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCttcttc         <  2:390651‑M2/84‑1 (MQ=255)

                                                                                   agttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCttcttc         <  1:3411090‑M2/84‑1 (MQ=255)

                                                                                        atTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAtt    >  2:2655518‑M2/3‑91 (MQ=255)

                                                                                        atTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAtt    >  2:691434‑M2/3‑91 (MQ=255)

                                                                                          tCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTa  >  2:2740037/1‑91 (MQ=255)

CTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTA  >  USA300TCH1516_ALE/682174‑682354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.