BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	768843 =	213 (1.120)	13 (0.070)	8/146	NT	6.7%	coding (597/1167 nt)	tetA_3	Tetracycline resistance protein, class B
*	?	USA300TCH1516_ALE	768872 =	168 (0.970)	13 (0.070)	8/146	NT	6.7%	coding (626/1167 nt)	tetA_3	Tetracycline resistance protein, class B

Only 100 of 271 total aligned reads displayed.

ATTTATAATGTCAATTGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACA  >  USA300TCH1516_ALE/768753‑768933

aTTTATAATGTCAATTGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAAtt                                                                                            >  1:3398714/1‑91 (MQ=255)

   taggtgaataatttaccttgtcagctgtgtatagtgaatacaatgtttcaaatgcagataaaccaaacgataatacaagtgttaaaaTAAc                                                                                         >  2:1169316‑M1/88‑91 (MQ=255)

   taggtgaataatttaccttgtcagctgtgtatagtgaatacaatgtttcaaatgcagataaaccaaacgataatacaagtgttaaaaTAAc                                                                                         <  2:3548907‑M1/4‑1 (MQ=255)

   taggtgaataatttaccttgtcagctgtgtatagtgaatacaatgtttcaaatgcagataaaccaaacgataatacaagtgttaaaaTAAc                                                                                         >  1:753574‑M1/88‑91 (MQ=255)

     taATGTCAATTGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTg                                                                                       >  1:373593/1‑91 (MQ=255)

      aaTGTCAATTGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTgg                                                                                      >  1:2337756/1‑91 (MQ=255)

       aTGTCAATTGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGa                                                                                     >  2:271101/1‑91 (MQ=255)

       aTGTCAATTGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGa                                                                                     >  2:2677674/1‑91 (MQ=255)

         gTCAATTGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGaaa                                                                                   >  2:1469231/1‑91 (MQ=255)

         gTCAATTGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGaaa                                                                                   <  2:1112713/91‑1 (MQ=255)

         aataatttaccttgtcagctgtgtatagtgaatacaatgtttcaaatgcagataaaccaaacgataatacaagtgttaaaaTAACTGGaaa                                                                                   >  1:3592856‑M1/82‑91 (MQ=255)

          tCAATTGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAg                                                                                  <  1:2537377/91‑1 (MQ=255)

              ttGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGtt                                                                              <  2:3699517/91‑1 (MQ=255)

               tGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGttt                                                                             <  2:281575/91‑1 (MQ=255)

               tGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGttt                                                                             >  2:3248731/1‑91 (MQ=255)

                gTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTtta                                                                            >  2:3385434/1‑91 (MQ=255)

                 tATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTttat                                                                           <  1:2417784/91‑1 (MQ=255)

                   ttGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTttatta                                                                         >  2:2169405/1‑91 (MQ=255)

                   ttGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTttatta                                                                         >  1:2035485/1‑91 (MQ=255)

                   ttGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTttatta                                                                         >  1:1325464/1‑91 (MQ=255)

                   ttGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTttatta                                                                         >  2:2166212/1‑91 (MQ=255)

                    tGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTac                                                                        <  2:2296271/91‑1 (MQ=255)

                     gATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTaca                                                                       <  2:499024/91‑1 (MQ=255)

                     gATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTaca                                                                       >  2:722145/1‑91 (MQ=255)

                     gATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTaca                                                                       >  1:1637786/1‑91 (MQ=255)

                     gATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTaca                                                                       >  1:2425434/1‑91 (MQ=255)

                      aTTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTacac                                                                      <  2:235836/91‑1 (MQ=255)

                       ttCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACAcc                                                                     <  2:3587007/91‑1 (MQ=255)

                       ttCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACAcc                                                                     <  1:1398883/91‑1 (MQ=255)

                         agctgtgtatagtgaatacaatgtttcaaatgcagataaaccaaacgataatacaagtgttaaaaTAACTGGAAAGTGTTTATTACACCAg                                                                   >  2:1319308‑M1/66‑91 (MQ=255)

                          aCGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGt                                                                  >  1:2118968/1‑91 (MQ=255)

                           ctgtgtatagtgaatacaatgtttcaaatgcagataaaccaaacgataatacaagtgttaaaaTAACTGGAAAGTGTTTATTACACCAGtt                                                                 >  1:1165351‑M1/64‑91 (MQ=255)

                              tCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTAtt                                                              <  1:1698240/91‑1 (MQ=255)

                              tCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTAtt                                                              >  1:1509710/1‑91 (MQ=255)

                               ccGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTAttt                                                             <  1:2522757/91‑1 (MQ=255)

                               ccGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTAttt                                                             >  2:523436/1‑91 (MQ=255)

                                cGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTAtttt                                                            >  2:1201453/1‑91 (MQ=255)

                                cGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTAtttt                                                            >  2:854401/1‑91 (MQ=255)

                                      aGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACTATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACt                                                      <  2:3826783/91‑1 (MQ=255)

                                           aCGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtat                                                 <  2:3023710/91‑1 (MQ=255)

                                           aCGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtat                                                 >  2:1391908/1‑91 (MQ=255)

                                           aCGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtat                                                 >  2:607785/1‑91 (MQ=255)

                                           aCGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtat                                                 >  1:491681/1‑91 (MQ=255)

                                           aCGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtat                                                 <  2:165847/91‑1 (MQ=255)

                                            cGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtatt                                                <  1:1522064/91‑1 (MQ=255)

                                            cGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtatt                                                <  1:3023302/91‑1 (MQ=255)

                                             gACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtatta                                               <  2:1850771/91‑1 (MQ=255)

                                              aCAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtattat                                              >  1:135618/1‑91 (MQ=255)

                                                 aGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGt                                           >  1:1727936/1‑91 (MQ=255)

                                                   tGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGttt                                         >  1:631564/1‑91 (MQ=255)

                                                   tGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGttt                                         <  2:3104978/91‑1 (MQ=255)

                                                    ggTTTCCAAAAGTTAGAGCCACAATTGCTAGCGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTg                                        <  2:2050437/91‑1 (MQ=255)

                                                    ggTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTg                                        >  2:461120/1‑91 (MQ=255)

                                                     gTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTgg                                       >  1:1039252/1‑91 (MQ=255)

                                                        tCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGttt                                    >  2:3277881/1‑91 (MQ=255)

                                                        tCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGttt                                    >  1:3147990/1‑91 (MQ=255)

                                                         ccAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTa                                   >  2:1344676/1‑91 (MQ=255)

                                                         ccAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTa                                   <  1:2602037/91‑1 (MQ=255)

                                                          cAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTAt                                  <  2:2544194/91‑1 (MQ=255)

                                                           aaaaGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATc                                 >  1:1659181/1‑91 (MQ=255)

                                                           aaaaGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATc                                 <  2:1680100/91‑1 (MQ=255)

                                                            aaaGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCt                                <  1:2797613/91‑1 (MQ=255)

                                                             aaGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTg                               <  1:2183505/91‑1 (MQ=255)

                                                             aaGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTg                               >  1:516143/1‑91 (MQ=255)

                                                              aGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGc                              >  1:1895157/1‑91 (MQ=255)

                                                              aGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGc                              >  2:1823333/1‑91 (MQ=255)

                                                              aGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGc                              >  2:3334907/1‑91 (MQ=255)

                                                                ttAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCAt                            >  2:904613/1‑91 (MQ=255)

                                                                 tAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCAtt                           <  2:758607/91‑1 (MQ=255)

                                                                 tAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCAtt                           >  1:408819/1‑91 (MQ=255)

                                                                 tAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCAtt                           <  1:32019/91‑1 (MQ=255)

                                                                  agagCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCAttt                          <  2:2526773/91‑1 (MQ=255)

                                                                   gagCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTg                         <  2:393768/91‑1 (MQ=255)

                                                                   gagCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTg                         <  1:2223408/91‑1 (MQ=255)

                                                                   gagCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGATTATCTGCATTTg                         >  1:3884630/1‑91 (MQ=255)

                                                                    agCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGa                        <  2:3208350/91‑1 (MQ=255)

                                                                    agCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGa                        >  1:3798649/1‑91 (MQ=255)

                                                                      ccACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGaaa                      >  1:53273/1‑91 (MQ=255)

                                                                      ccACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGaaa                      >  1:1965415/1‑91 (MQ=255)

                                                                         caATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACAt                   <  2:1198087/91‑1 (MQ=255)

                                                                         caATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACAt                   <  1:1009271/91‑1 (MQ=255)

                                                                         caATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACAt                   >  2:3586482/1‑91 (MQ=255)

                                                                           aTTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTg                 >  2:1610137/1‑91 (MQ=255)

                                                                           aTTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTg                 >  2:2917011/1‑91 (MQ=255)

                                                                           aTTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTg                 >  2:2206263/1‑91 (MQ=255)

                                                                            ttGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGt                <  1:1912996/91‑1 (MQ=255)

                                                                            ttGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGt                <  1:937932/91‑1 (MQ=255)

                                                                              gCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTAt              <  2:1739118/91‑1 (MQ=255)

                                                                              gCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTAt              >  1:2100273/1‑91 (MQ=255)

                                                                                 aaCGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCa           >  1:3542617/1‑91 (MQ=255)

                                                                                  aCGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCAc          <  1:2644277/91‑1 (MQ=255)

                                                                                   cGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACt         >  1:1797210/1‑91 (MQ=255)

                                                                                    gAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACta        <  2:3730350/91‑1 (MQ=255)

                                                                                    gAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACta        <  2:3370778/91‑1 (MQ=255)

                                                                                    gAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACta        <  1:712057/91‑1 (MQ=255)

                                                                                      aaaTTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACtata      >  1:3819657/1‑91 (MQ=255)

                                                                                        aTTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATaca    >  1:989847/1‑91 (MQ=255)

                                                                                         ttAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATacac   >  2:3463431/1‑91 (MQ=255)

                                                                                          TAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATAcaca  >  2:1966496‑M1/1‑91 (MQ=255)

                                                                                          TAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATAcaca  >  1:2702305‑M1/1‑91 (MQ=255)

ATTTATAATGTCAATTGTATTGATTCACGATCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACA  >  USA300TCH1516_ALE/768753‑768933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.