BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	768843 =	213 (1.120)	13 (0.070)	8/146	NT	6.7%	coding (597/1167 nt)	tetA_3	Tetracycline resistance protein, class B
*	?	USA300TCH1516_ALE	768872 =	168 (0.970)	13 (0.070)	8/146	NT	6.7%	coding (626/1167 nt)	tetA_3	Tetracycline resistance protein, class B

Only 100 of 263 total aligned reads displayed.

TCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCACCTAAAGA  >  USA300TCH1516_ALE/768783‑768962

tCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTAtt                                                                                           >  1:1509711/1‑91 (MQ=255)

 ccGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTAttt                                                                                          <  1:2521445/91‑1 (MQ=255)

  cGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTAtttt                                                                                         >  2:854401/1‑91 (MQ=255)

  cGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTAtttt                                                                                         >  2:1201311/1‑91 (MQ=255)

  cGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTAtttt                                                                                         >  2:854086/1‑91 (MQ=255)

    aaaaaGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTaa                                                                                       <  2:2560707/91‑1 (MQ=255)

    aaaaaGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTaa                                                                                       <  1:2141942/91‑1 (MQ=255)

       aaGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAacac                                                                                    >  2:4989/1‑91 (MQ=255)

         gTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACtt                                                                                  >  2:2203576/1‑91 (MQ=255)

            tACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGta                                                                               >  1:2209050/1‑91 (MQ=255)

             aCGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtat                                                                              >  2:607785/1‑91 (MQ=255)

             aCGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtat                                                                              >  1:491681/1‑91 (MQ=255)

             aCGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtat                                                                              >  2:1391866/1‑91 (MQ=255)

             aCGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtat                                                                              <  1:1765656/91‑1 (MQ=255)

             aCGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtat                                                                              <  2:165847/91‑1 (MQ=255)

             aCGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtat                                                                              >  1:1919780/1‑91 (MQ=255)

             aCGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtat                                                                              >  2:242000/1‑91 (MQ=255)

              cGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtatt                                                                             >  1:791630/1‑91 (MQ=255)

              cGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACATGtatt                                                                             <  1:3023278/91‑1 (MQ=255)

               gACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtatta                                                                            <  2:754587/91‑1 (MQ=255)

                tgtttcaaatgcagataaaccaaacgataatacaagtgttaaaataactggtgtaataaacactttccagttaTTTTAACACTTGtattat                                                                           >  1:2616538‑M2/74‑91 (MQ=255)

                aCAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtattat                                                                           <  2:3325654/91‑1 (MQ=255)

                aCAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGtattat                                                                           >  1:135618/1‑91 (MQ=255)

                  aaGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCg                                                                         >  1:257320/1‑91 (MQ=255)

                   aGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGt                                                                        <  1:2006999/91‑1 (MQ=255)

                    gTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGtt                                                                       <  2:1024876/91‑1 (MQ=255)

                     tGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGttt                                                                      >  2:2914436/1‑91 (MQ=255)

                      ggTTTCCAAAAGTTAGAGCCACAATTGCTCACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATCATCGTTTg                                                                     >  2:3375044/1‑91 (MQ=255)

                      ggTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTg                                                                     >  2:461120/1‑91 (MQ=255)

                       gTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTgg                                                                    >  1:1039252/1‑91 (MQ=255)

                           ccAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTa                                                                >  2:1344676/1‑91 (MQ=255)

                           ccAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTa                                                                <  1:2602037/91‑1 (MQ=255)

                             aaaaGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATc                                                              >  1:1659181/1‑91 (MQ=255)

                              aaaGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCt                                                             <  1:2797613/91‑1 (MQ=255)

                              aaaGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCt                                                             >  2:1433937/1‑91 (MQ=255)

                               aaGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTg                                                            <  2:3360835/91‑1 (MQ=255)

                               aaGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTg                                                            >  1:516293/1‑91 (MQ=255)

                               aaGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTg                                                            <  1:338593/91‑1 (MQ=255)

                                aGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGc                                                           >  1:2067002/1‑91 (MQ=255)

                                  ttAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCAt                                                         >  2:904613/1‑91 (MQ=255)

                                  ttAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCAt                                                         >  1:230882/1‑91 (MQ=255)

                                  ttAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCAt                                                         <  1:1447668/91‑1 (MQ=255)

                                   tAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCAtt                                                        <  1:32019/91‑1 (MQ=255)

                                   tAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCAtt                                                        >  1:408316/1‑91 (MQ=255)

                                    agagCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCAttt                                                       <  2:2526773/91‑1 (MQ=255)

                                     gagCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTg                                                      <  2:3805632/91‑1 (MQ=255)

                                     gagCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTg                                                      <  2:393768/91‑1 (MQ=255)

                                     gagCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGATTATCTGCATTTg                                                      >  1:3884630/1‑91 (MQ=255)

                                      agCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGa                                                     >  2:1742185/1‑91 (MQ=255)

                                      agCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGa                                                     <  2:3208350/91‑1 (MQ=255)

                                       gCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGaa                                                    >  1:2419614/1‑91 (MQ=255)

                                        ccACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGaaa                                                   >  1:53273/1‑91 (MQ=255)

                                           caATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACAt                                                >  2:3586482/1‑91 (MQ=255)

                                           caATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACAt                                                <  1:1009271/91‑1 (MQ=255)

                                             aTTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTg                                              >  2:1610137/1‑91 (MQ=255)

                                             aTTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTg                                              >  2:2024970/1‑91 (MQ=255)

                                              ttGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGt                                             >  2:279434/1‑91 (MQ=255)

                                              ttGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGt                                             <  1:1912996/91‑1 (MQ=255)

                                              ttGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGt                                             <  1:937932/91‑1 (MQ=255)

                                              ttGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGt                                             <  1:648859/91‑1 (MQ=255)

                                                gCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTAt                                           >  1:2100273/1‑91 (MQ=255)

                                                  tAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTc                                         <  2:2215962/91‑1 (MQ=255)

                                                    aCGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCAc                                       <  1:2644277/91‑1 (MQ=255)

                                                     gttaaaataactggtgtaataaacactttccagttaTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACt                                      >  1:2422226‑M2/37‑91 (MQ=255)

                                                     cGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACt                                      >  2:1218523/1‑91 (MQ=255)

                                                          aataactggtgtaataaacactttccagttaTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTAtact                                 >  2:3850630‑M2/32‑90 (MQ=255)

                                                          aataactggtgtaataaacactttccagttaTTATAACACTTGTATAATCGTTTGGTTTCTCTGCATTTGAAACATTGTATTCACTATaca                                 >  1:3104318‑M2/32‑91 (MQ=255)

                                                          aTTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATaca                                 >  2:568970/1‑91 (MQ=255)

                                                            TAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATAcaca                               <  1:72993‑M1/91‑1 (MQ=255)

                                                             AACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAg                              >  1:1720964‑M1/1‑91 (MQ=255)

                                                               CTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATCCACAGCt                            <  2:3447796‑M1/91‑1 (MQ=255)

                                                               CTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCt                            >  1:3677352‑M1/1‑91 (MQ=255)

                                                               CTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCt                            <  1:3831585‑M1/91‑1 (MQ=255)

                                                               CTGGAAAGTGTTCATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCt                            >  2:3228844‑M1/1‑91 (MQ=255)

                                                                TGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTg                           <  2:132234‑M1/91‑1 (MQ=255)

                                                                 ggtgtaataaacactttccagttaTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGa                          >  2:3035300‑M2/25‑91 (MQ=255)

                                                                  GAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGAc                         >  1:3407010‑M1/1‑91 (MQ=255)

                                                                    aaGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACaa                       >  2:1896284/1‑91 (MQ=255)

                                                                      gtgtTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAgg                     >  1:1546685/1‑91 (MQ=255)

                                                                       tgtTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGt                    >  1:3196295/1‑91 (MQ=255)

                                                                        gtTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTa                   <  1:3477786/91‑1 (MQ=255)

                                                                         tttATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTaa                  <  1:854245/91‑1 (MQ=255)

                                                                         tttATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTaa                  <  1:2696410/91‑1 (MQ=255)

                                                                         tttATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTaa                  >  2:3312649/1‑91 (MQ=255)

                                                                           tattaCACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAat                <  1:1201311/91‑1 (MQ=255)

                                                                           tattaCACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAat                <  1:1203132/91‑1 (MQ=255)

                                                                              taCACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAattat             <  2:3630808/91‑1 (MQ=255)

                                                                               tttccagttaTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAattatt            >  1:3592856‑M2/11‑91 (MQ=255)

                                                                                 acCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCa          <  2:408819/91‑1 (MQ=255)

                                                                                  ccagttaTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCAc         >  2:116064‑M2/8‑91 (MQ=255)

                                                                                  ccagttaTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCAc         >  1:1812148‑M2/8‑91 (MQ=255)

                                                                                   cagttaTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCAcc        <  2:3022277‑M2/85‑1 (MQ=255)

                                                                                     gttaTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCACCTa      >  2:1169316‑M2/5‑91 (MQ=255)

                                                                                     gttaTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCACCTa      <  2:2678357‑M2/87‑1 (MQ=255)

                                                                                     gttaTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCACCTa      >  2:1547709‑M2/5‑91 (MQ=255)

                                                                                     gttaTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCACCTa      >  2:1847682‑M2/5‑91 (MQ=255)

                                                                                      ttaTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCACCTaa     <  2:1727936‑M2/88‑1 (MQ=255)

                                                                                        aTTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCACCTAAAg   <  1:1650644‑M2/90‑1 (MQ=255)

                                                                                         ttttAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCACCTAAAGa  >  2:3150291/1‑91 (MQ=255)

                                                                                         ttttAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCACCTAAAGa  <  2:2404750/91‑1 (MQ=255)

TCCGAAAAAGTCTACGACAAGTGGTTTCCAAAAGTTAGAGCCACAATTGCTAACGAAAATTAACTGGAAAGTGTTTATTACACCAGTTATTTTAACACTTGTATTATCGTTTGGTTTATCTGCATTTGAAACATTGTATTCACTATACACAGCTGACAAGGTAAATTATTCACCTAAAGA  >  USA300TCH1516_ALE/768783‑768962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.