| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1119593 = | 164 (0.860) | 19 (0.120) | 9/136 | NT | 11.8% | intergenic (+12/+297) | typA/USA300HOU_RS05545 | GTP‑binding protein TypA/BipA/hypothetical protein |
| ? | USA300TCH1516_ALE | 1119635 = | 144 (0.890) | intergenic (+54/+255) | typA/USA300HOU_RS05545 | GTP‑binding protein TypA/BipA/hypothetical protein | |||||
Only 100 of 341 total aligned reads displayed.
AAGAAAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACT > USA300TCH1516_ALE/1119503‑1119683 | ttaatatctgaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgcca > 1:669040‑M1/91‑91 (MQ=255)ttaatatctgaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgcca > 1:3258806‑M1/91‑91 (MQ=255) taatatctgaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccaa > 1:2824062‑M1/90‑91 (MQ=255) gaaagaaaATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAA > 2:1657487‑M1/1‑91 (MQ=255) aatatctgaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccaaa < 1:2563011‑M1/3‑1 (MQ=255) aatatctgaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccaaa < 2:1079980‑M1/3‑1 (MQ=255) tatctgaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccaaacg < 1:518538‑M1/5‑3 (MQ=255) tatctgaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAag < 2:1367107‑M1/5‑1 (MQ=255) tatctgaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAag < 2:463771‑M1/5‑1 (MQ=255) aagaaaATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAG < 2:2733126‑M1/91‑1 (MQ=255) atctgaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAaga > 2:3224115‑M1/86‑91 (MQ=255) atctgaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAaga < 2:3502276‑M1/6‑1 (MQ=255) agaaaATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGA < 2:1185598‑M1/91‑1 (MQ=255) tgaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAAGAGaa < 1:1925854‑M1/9‑1 (MQ=255) tgaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAAGAGaa > 1:2654298‑M1/83‑91 (MQ=255) gaataaacaagttagaaatttgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAAGAGAAg > 1:2783233‑M1/82‑91 (MQ=255) aaTTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAG < 2:3747371‑M1/91‑1 (MQ=255) aaTTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAG > 1:1082169‑M1/1‑91 (MQ=255) aaTTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAG < 1:2074050‑M1/91‑1 (MQ=255) aTTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGC < 2:639490‑M1/91‑1 (MQ=255) ttttAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCT > 2:556450‑M1/1‑91 (MQ=255) ttttAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCT > 1:1835730‑M1/1‑91 (MQ=255) ttttAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCT > 1:164197‑M1/1‑91 (MQ=255) ttttAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCT < 1:3520236‑M1/91‑1 (MQ=255) tttAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTg > 1:779304/1‑91 (MQ=255) tAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAg > 2:1304891/1‑91 (MQ=255) tAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAg < 1:321112/91‑1 (MQ=255) aaaCAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGc < 1:1277020/91‑1 (MQ=255) aCAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGa < 1:689911/91‑1 (MQ=255) cAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGAt > 1:2223504/1‑91 (MQ=255) aaaaaTGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATg > 1:1367107/1‑91 (MQ=255) aaaaTGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGa > 2:1538699/1‑91 (MQ=255) aaaaTGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGa > 1:3667812/1‑91 (MQ=255) aaaTGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGaa < 2:3025276/91‑1 (MQ=255) tGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGt < 2:2568946/91‑1 (MQ=255) gTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGtt < 1:1556317/91‑1 (MQ=255) ttCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTg > 1:1216578/1‑91 (MQ=255) cGTGAGAAAGGAGCAAATCGTATCAAACAAAGCATGCAAGAAAACGAATAATTTAACATAATAAGAGGGAAGCTaagcaactttcatcgct < 2:1251140‑M1/91‑18 (MQ=255) cGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTaagcaactttcatcgct < 2:3879008‑M1/91‑18 (MQ=255) tgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAAGAGAAGCTGAGCGATGAAAGTTGCtt > 2:43310‑M1/62‑91 (MQ=255) gTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTaagcaactttcatcgctc < 1:2687145‑M1/91‑19 (MQ=255) tGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAAATTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTa < 2:3413380‑M2/91‑2 (MQ=255) aaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAg > 2:857478‑M1/60‑91 (MQ=255) aaaaaGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTaagcaactttcatcgctcagc < 1:1065521‑M1/91‑22 (MQ=255) aaaaaGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagc < 1:332142‑M2/91‑4 (MQ=255) aatgtgaaagtaacagtaaataatagcatttaaacactttttcaaatattatatgccAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCt > 2:2983705‑M1/58‑91 (MQ=255) aatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCt > 1:2611918‑M1/58‑91 (MQ=255) aaaaGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagct > 2:737621‑M2/1‑87 (MQ=255) aaaaGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagct > 2:943350‑M2/1‑87 (MQ=255) aaaaGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagct > 1:945443‑M2/1‑87 (MQ=255) aaaaGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagct > 1:3434654‑M2/1‑87 (MQ=255) atgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCtt > 1:3295155‑M1/57‑91 (MQ=255) aaaGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTaagcaactttcatcgctcagctt < 1:1969629‑M1/91‑24 (MQ=255) aaaGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagctt > 1:3578339‑M2/1‑86 (MQ=255) aaaGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagctt < 2:1623371‑M2/91‑6 (MQ=255) gaagCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTaagcaactttcatcgctcagcttctc < 1:85561‑M1/91‑27 (MQ=255) aaagcAAGGCGTAACAAACAACGGATGCAAGAAAGCCAATAATTTAACATAATAAAAGAGAAGCTaaccaactttcatcgctcggcttctc < 2:3832087‑M1/90‑27 (MQ=255) aagCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTAAACATAATAAAAGAGAAGCTaagcaactttcatcgctcagctt > 1:3769364‑M1/1‑64 (MQ=255) agCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTaagcaactttcctcgctc > 2:3716368‑M1/1‑63 (MQ=255) agCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTaagcaactttcatcgctc < 1:3716368‑M1/81‑19 (MQ=255) gCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagcttctcttt > 2:754188‑M2/1‑80 (MQ=255) cAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTaagcaactttcatcgctcagcttctctttt < 1:795911‑M1/91‑31 (MQ=255) aGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGc > 2:659609/1‑91 (MQ=255) aGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGc < 1:2967990/91‑1 (MQ=255) gCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCa > 2:267222/1‑91 (MQ=255) gCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCa > 1:2369584/1‑91 (MQ=255) cGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCat < 2:1793446/91‑1 (MQ=255) cGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCat < 1:2102507/91‑1 (MQ=255) caaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataat > 2:2767379/1‑91 (MQ=255) caaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataat > 1:3251360/1‑91 (MQ=255) caaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataat > 2:2545138/1‑91 (MQ=255) aaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataata > 2:3267639/1‑91 (MQ=255) acaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATAtt < 1:423214/91‑1 (MQ=255) aaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGa < 2:1434464/91‑1 (MQ=255) atgatgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaa > 1:33553/1‑91 (MQ=255) gatgCAAGAAAACGAATAATTTAACACAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaa > 2:2222663/1‑91 (MQ=255) atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa < 1:3404392/91‑1 (MQ=255) atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa > 1:1151567/1‑91 (MQ=255) tgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAg > 2:2845308/1‑91 (MQ=255) gCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAgt < 2:311122/91‑1 (MQ=255) aGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGATTAAATTTTGGCATAAAAAAAAAAAAAAAGTGtt < 2:2893516/91‑1 (MQ=255) gAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGttt > 1:3146450/1‑91 (MQ=255) gAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGttt < 2:1655809/91‑1 (MQ=255) cGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATg > 2:3336176/1‑91 (MQ=255) cGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATg < 2:2101451/91‑1 (MQ=255) cGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATg > 1:3110293/1‑91 (MQ=255) gAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGc > 2:2060030/1‑91 (MQ=255) gAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGc < 1:430695/91‑1 (MQ=255) taatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATAAATAAAAAAGTGTTTAAATGCtat < 2:3427707/91‑1 (MQ=255) aatattatatgccTAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtatt > 2:3315731‑M1/14‑91 (MQ=255) aatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtatt < 1:2281139/91‑1 (MQ=255) tttAACATAATAAAAGAGAAGCTGAGAGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtattat < 2:1130675/91‑1 (MQ=255) aaCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagcttctcttttattatgttaaattattcgttttcttgcatcatttgtttgat < 1:501918‑M2/91‑54 (MQ=255) aaCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTCAATGCTATTATTTc > 2:2330467/1‑91 (MQ=255) aCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTcc < 1:1458004/91‑1 (MQ=255) ataataAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTg < 1:248245/91‑1 (MQ=255) aaaaGAGAAGCTaagcaactttcatcgctcagcttctcttttattatgttaaattattcgttttcttgcatcatttgtttgatacgctttg < 2:1966127‑M1/91‑80 (MQ=255) aaaaGAGAAGCTaagcaactttcatcgctcagcttctcttttattatgttaaattattcgttttcttgcatcatttgtttgatacgctttg < 2:1011595‑M1/91‑80 (MQ=255) AAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACt < 1:611321‑M1/91‑1 (MQ=255) AAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACt > 2:706634‑M1/1‑91 (MQ=255) | AAGAAAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACT > USA300TCH1516_ALE/1119503‑1119683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |