BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1119593 =	164 (0.860)	19 (0.120)	9/136	NT	11.8%	intergenic (+12/+297)	typA/USA300HOU_RS05545	GTP‑binding protein TypA/BipA/hypothetical protein
*	?	USA300TCH1516_ALE	1119635 =	144 (0.890)	19 (0.120)	9/136	NT	11.8%	intergenic (+54/+255)	typA/USA300HOU_RS05545	GTP‑binding protein TypA/BipA/hypothetical protein

Only 100 of 273 total aligned reads displayed.

AAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAA  >  USA300TCH1516_ALE/1119546‑1119724

aaGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTgg                                                                                          <  2:2931412/91‑1 (MQ=255)

aaGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTgg                                                                                          <  1:3681356/91‑1 (MQ=255)

  gCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCa                                                                                        >  1:3345593/1‑91 (MQ=255)

  gCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCa                                                                                        >  2:267222/1‑91 (MQ=255)

  gCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCa                                                                                        <  1:270497/91‑1 (MQ=255)

  gCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCa                                                                                        >  1:2369398/1‑91 (MQ=255)

   cGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCat                                                                                       <  2:1793446/91‑1 (MQ=255)

   cGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCat                                                                                       <  1:3389029/91‑1 (MQ=255)

    gTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCata                                                                                      <  2:1958132/91‑1 (MQ=255)

      aTCAAACAACTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCAtata                                                                                    <  2:3804353/91‑1 (MQ=255)

      aTCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCAtata                                                                                    >  2:1011857/1‑91 (MQ=255)

      aTCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCAtata                                                                                    >  2:1463470/1‑91 (MQ=255)

        caaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataat                                                                                  >  1:143754/1‑91 (MQ=255)

        caaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataat                                                                                  >  2:2545138/1‑91 (MQ=255)

        caaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataat                                                                                  >  1:2197403/1‑91 (MQ=255)

        caaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataat                                                                                  >  2:2767379/1‑91 (MQ=255)

         aaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataata                                                                                 >  2:3267464/1‑91 (MQ=255)

         aaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataata                                                                                 >  1:970085/1‑91 (MQ=255)

           acaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATAtt                                                                               <  2:768784/91‑1 (MQ=255)

           acaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATAtt                                                                               <  2:342840/91‑1 (MQ=255)

           acaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATAtt                                                                               >  1:3502276/1‑91 (MQ=255)

           aatagcatttaaacactttttcaaatattatatgccaaaagagaagctaagcaactttcatcgctcagcttctctttaGGCATATAATAtt                                                                               >  2:3315731‑M2/79‑91 (MQ=255)

             aaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTg                                                                             >  2:161920/1‑91 (MQ=255)

              aaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGa                                                                            <  2:1434464/91‑1 (MQ=255)

              aaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGa                                                                            <  1:3214999/91‑1 (MQ=255)

               atgatgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaa                                                                           >  1:1917466/1‑91 (MQ=255)

                 atttaaacactttttcaaatattatatgccaaaagagaagctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGaaaa                                                                         >  1:463771‑M2/73‑91 (MQ=255)

                  atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                        >  1:1151567/1‑91 (MQ=255)

                   tgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAg                                                                       >  2:2845308/1‑91 (MQ=255)

                    gCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAgt                                                                      <  2:3281977/91‑1 (MQ=255)

                      aaGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAgtgt                                                                    >  2:3175962/1‑91 (MQ=255)

                       aGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGATTAAATTTTGGCATAAAAAAAAAAAAAAAGTGtt                                                                   <  2:2893516/91‑1 (MQ=255)

                        gAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGttt                                                                  <  2:1656080/91‑1 (MQ=255)

                        gAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGttt                                                                  <  2:644268/91‑1 (MQ=255)

                           aaCGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTaaa                                                               <  1:1479955/91‑1 (MQ=255)

                             cGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATg                                                             >  2:3336176/1‑91 (MQ=255)

                             cGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATg                                                             <  2:2101451/91‑1 (MQ=255)

                             cGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATg                                                             >  1:3110293/1‑91 (MQ=255)

                              gAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGc                                                            <  1:430695/91‑1 (MQ=255)

                              gAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGc                                                            >  2:2060030/1‑91 (MQ=255)

                               aataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCt                                                           >  2:3024995/1‑91 (MQ=255)

                                ataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCta                                                          <  1:161920/91‑1 (MQ=255)

                                ataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAAAAAAAAAAAAAGTGTTTAAATGCta                                                          <  2:259121/91‑1 (MQ=255)

                                    tttAACATAATAAAAGAGAAGCTGAGAGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtattat                                                      <  2:1130675/91‑1 (MQ=255)

                                       aaCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTCAATGCTATTATTTc                                                   >  2:2330467/1‑91 (MQ=255)

                                       aaCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTc                                                   >  1:701897/1‑91 (MQ=255)

                                        aCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTcc                                                  <  2:3727601/91‑1 (MQ=255)

                                         cATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCt                                                 <  1:1196180/91‑1 (MQ=255)

                                           taataaAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGt                                               <  1:1350352/91‑1 (MQ=255)

                                            aataaAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGtt                                              >  2:3670741/1‑91 (MQ=255)

                                               AAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACt                                           >  2:706634‑M1/1‑91 (MQ=255)

                                               AAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACt                                           <  1:611321‑M1/91‑1 (MQ=255)

                                                AAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACtt                                          >  1:3035158‑M1/1‑91 (MQ=255)

                                                 AAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACttt                                         >  1:792949‑M1/1‑91 (MQ=255)

                                                  AGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTc                                        <  1:900977‑M1/91‑1 (MQ=255)

                                                    AGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTcac                                      >  1:3839255‑M1/1‑91 (MQ=255)

                                                    AGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTcac                                      <  1:2558215‑M1/91‑1 (MQ=255)

                                                     GAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATACTATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTcaca                                     <  2:796595‑M1/91‑1 (MQ=255)

                                                      aagctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAACAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAt                                    >  1:3300757‑M2/36‑91 (MQ=255)

                                                      aagctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAt                                    >  1:3295155‑M2/36‑91 (MQ=255)

                                                      AAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAt                                    <  1:1698419‑M1/91‑1 (MQ=255)

                                                       agctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                   >  1:279494‑M2/35‑91 (MQ=255)

                                                       agctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                   >  1:3433209‑M2/35‑91 (MQ=255)

                                                       agctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTACTGTTACTTTCACAtt                                   >  2:2983705‑M2/35‑91 (MQ=255)

                                                        GCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAttt                                  <  2:1716282‑M1/91‑1 (MQ=255)

                                                        GCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAttt                                  <  1:539790‑M1/91‑1 (MQ=255)

                                                         ctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtttt                                 >  2:857478‑M2/33‑91 (MQ=255)

                                                           aagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCa                               >  2:419626‑M2/31‑91 (MQ=255)

                                                              cGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAAt                            <  1:3792372/91‑1 (MQ=255)

                                                                actttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAAttt                          <  2:2611918‑M2/66‑1 (MQ=255)

                                                                 tGAAAGTTGCTTAGCTACTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTc                         <  2:3146598/91‑1 (MQ=255)

                                                                   aaaGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTa                       >  2:2318732/1‑91 (MQ=255)

                                                                     aGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAAc                     >  1:1094665/1‑91 (MQ=255)

                                                                     aGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAAc                     <  2:490491/91‑1 (MQ=255)

                                                                      gTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACt                    <  2:3250362/91‑1 (MQ=255)

                                                                         gCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCACATTTCTAACttcc                 >  1:3885389/1‑89 (MQ=255)

                                                                         gCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTgg                 >  2:3854470/1‑90 (MQ=255)

                                                                         gCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGt                 >  2:2483548/1‑91 (MQ=255)

                                                                         gCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGt                 >  1:1581502/1‑91 (MQ=255)

                                                                         gCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTCAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGt                 <  2:3406679/91‑1 (MQ=255)

                                                                         gCTTAGCTTCTCTTTTAGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGt                 <  2:2984485/91‑1 (MQ=255)

                                                                          cTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGtt                <  1:2320223/91‑1 (MQ=255)

                                                                          cTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGtt                >  1:2733795/1‑91 (MQ=255)

                                                                            tAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTa              <  1:1802237/91‑1 (MQ=255)

                                                                            tAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTa              <  1:2060030/91‑1 (MQ=255)

                                                                            tAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTa              <  2:127400/91‑1 (MQ=255)

                                                                                ttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCa          >  1:2634338‑M2/10‑91 (MQ=255)

                                                                                 tctcttttGGCATATAATATTTGAAACAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAg         >  2:2207657‑M2/9‑91 (MQ=255)

                                                                                 tctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAg         <  1:2655247‑M2/83‑1 (MQ=255)

                                                                                 tctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAg         >  1:1284914‑M2/9‑91 (MQ=255)

                                                                                 tctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTCTCAAATTTCTAACTTGTTTATTCAg         >  1:3601511‑M2/9‑91 (MQ=255)

                                                                                    cttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGata      <  2:1367107‑M2/86‑1 (MQ=255)

                                                                                     ttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGatat     <  1:3141618‑M2/87‑1 (MQ=255)

                                                                                     ttttGGCATAGAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGatat     <  1:2510210‑M2/87‑1 (MQ=255)

                                                                                      tttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATAtt    <  2:1079980‑M2/88‑1 (MQ=255)

                                                                                       ttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTa   >  1:2824062‑M2/3‑91 (MQ=255)

                                                                                        tGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTaa  <  2:1151567‑M2/90‑1 (MQ=255)

                                                                                        tGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTaa  >  1:3258806‑M2/2‑91 (MQ=255)

                                                                                        tGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTaa  <  2:1335264‑M2/90‑1 (MQ=255)

                                                                                        tGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTaa  >  1:669189‑M2/2‑91 (MQ=255)

AAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAA  >  USA300TCH1516_ALE/1119546‑1119724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.