BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1129920	179 (0.940)	14 (0.080)	9/148	NT	7.3%	coding (372/1038 nt)	USA300HOU_RS05585	hypothetical protein
*	?	USA300TCH1516_ALE	= 1129939	188 (1.070)	14 (0.080)	9/148	NT	7.3%	coding (391/1038 nt)	USA300HOU_RS05585	hypothetical protein

Only 100 of 251 total aligned reads displayed.

TGTGTTTAAAGACAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAA  >  USA300TCH1516_ALE/1129830‑1130010

 gtgtTTAAAGACAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTa                                                                                           <  2:2118251/91‑1 (MQ=255)

 gtgtTTAAAGACAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTa                                                                                           >  1:1338807/1‑91 (MQ=255)

   gtTTAAAGACAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGt                                                                                         >  1:1681330/1‑91 (MQ=255)

    tttAAAGACAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTc                                                                                        <  2:917484/91‑1 (MQ=255)

     ttAAAGACAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTcc                                                                                       <  2:2412222/91‑1 (MQ=255)

      tAAAGACAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCg                                                                                      >  1:2382718/1‑91 (MQ=255)

        aaGACAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGtt                                                                                    <  1:3454965/91‑1 (MQ=255)

        aaGACAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGtt                                                                                    <  1:999160/91‑1 (MQ=255)

          gACAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTaa                                                                                  <  2:1731876/91‑1 (MQ=255)

            cAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTaaaa                                                                                <  2:966762/91‑1 (MQ=255)

            cAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTaaaa                                                                                >  1:2750010/1‑91 (MQ=255)

             aaaaaCAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTaaaaa                                                                               <  1:3338794/91‑1 (MQ=255)

             aaaaaCAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTaaaaa                                                                               >  2:2325760/1‑91 (MQ=255)

              aaaaCAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAAt                                                                              <  2:1853969/91‑1 (MQ=255)

              aaaaCAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAAt                                                                              <  1:2914130/91‑1 (MQ=255)

               aaaCAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTgtcctatttttaacg                                                                             <  2:1908515‑M1/91‑16 (MQ=255)

                aaCAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAg                                                                            <  1:1111791/91‑1 (MQ=255)

                 aCAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAgg                                                                           >  1:1051555/1‑91 (MQ=255)

                  cAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGa                                                                          <  2:2917129/91‑1 (MQ=255)

                   aGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTgtcctatttttaacggact                                                                         <  1:2557512‑M1/91‑20 (MQ=255)

                   aGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGac                                                                         <  1:1634383/91‑1 (MQ=255)

                   aGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGac                                                                         <  2:1281291/91‑1 (MQ=255)

                    gTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTgtcctatttttaacggacta                                                                        <  1:3333745‑M1/91‑21 (MQ=255)

                    gTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACa                                                                        >  2:3325634‑M2/1‑90 (MQ=255)

                    gTTATTACATTGTTTCAACTAAACGAGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTCAAAAATAGGACa                                                                        <  2:394944‑M2/91‑2 (MQ=255)

                     ttattaCATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATATGACaa                                                                       <  2:1628982‑M2/91‑3 (MQ=255)

                     ttattaCATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACaa                                                                       >  2:2728151‑M2/1‑89 (MQ=255)

                      tattaCATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTgtcctatttttaacggactaac                                                                      <  1:3043916‑M1/91‑23 (MQ=255)

                       attaCATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTgtcctatttttaacggactaaca                                                                     <  2:68024‑M1/91‑24 (MQ=255)

                       attaCATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACaaca                                                                     <  2:1783484‑M2/91‑5 (MQ=255)

                             ttGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGc                                                               >  1:646010/1‑91 (MQ=255)

                             ttGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGc                                                               <  2:801935/91‑1 (MQ=255)

                             ttGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGACAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGc                                                               <  1:3363084/91‑1 (MQ=255)

                              tGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCa                                                              <  1:431607/91‑1 (MQ=255)

                                tttCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGa                                                            >  1:1060911/1‑91 (MQ=255)

                                tttCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGa                                                            <  1:1201889/91‑1 (MQ=255)

                                 ttCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGaa                                                           >  1:982559/1‑91 (MQ=255)

                                   cAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTc                                                                                        >  2:953148/1‑60 (MQ=255)

                                    aaCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAtt                                                        >  2:1482204/1‑91 (MQ=255)

                                    aaCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAtt                                                        >  1:3562076/1‑91 (MQ=255)

                                    aaCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAtt                                                        >  1:1881064/1‑91 (MQ=255)

                                    aaCTAAACGTGAAGAAATCGTTCCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAtt                                                        <  1:535113/91‑1 (MQ=255)

                                     aCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttt                                                       >  1:1378061/1‑91 (MQ=255)

                                     aCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttt                                                       <  1:1732647/91‑1 (MQ=255)

                                     aCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttt                                                       >  1:2188097/1‑91 (MQ=255)

                                     aCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttt                                                       >  1:1254998/1‑91 (MQ=255)

                                      cTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAtttt                                                      <  2:526569/91‑1 (MQ=255)

                                       tAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttttt                                                     <  1:2293672/91‑1 (MQ=255)

                                       tAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttttt                                                     <  1:705783/91‑1 (MQ=255)

                                        aaaCGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTa                                                    >  1:3762904/1‑91 (MQ=255)

                                        aaaCGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTa                                                    <  2:45285/91‑1 (MQ=255)

                                         aaCGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTaa                                                   <  1:2963569/91‑1 (MQ=255)

                                         aaCGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTaa                                                   <  1:2963789/91‑1 (MQ=255)

                                          aCGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAAt                                                  >  2:2564227/1‑91 (MQ=255)

                                            gTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCa                                                <  2:3774967/91‑1 (MQ=255)

                                             tGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATCTTTAATCAt                                               >  2:2590684/1‑91 (MQ=255)

                                                agaaATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACa                                            <  2:1962850/91‑1 (MQ=255)

                                                  aaaTCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAg                                          >  2:3210197/1‑91 (MQ=255)

                                                  aaaTCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAg                                          >  1:2769858/1‑91 (MQ=255)

                                                  aaaTCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAg                                          >  1:1102902/1‑91 (MQ=255)

                                                   aaTCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGt                                         >  2:3141137/1‑91 (MQ=255)

                                                   aaTCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGt                                         <  2:2296973/91‑1 (MQ=255)

                                                      cGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTAtt                                      <  1:870895/91‑1 (MQ=255)

                                                        tttCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTaa                                    >  2:474530/1‑91 (MQ=255)

                                                          tCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATc                                  >  2:267234/1‑91 (MQ=255)

                                                           cAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATcc                                 <  1:454332/91‑1 (MQ=255)

                                                            aGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCa                                <  1:470782/91‑1 (MQ=255)

                                                             gtgtATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAg                               >  2:177542/1‑91 (MQ=255)

                                                             gtgtATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAg                               >  1:1230976/1‑91 (MQ=255)

                                                                  tGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCg                          <  2:3515181/91‑1 (MQ=255)

                                                                     tACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTcc                       <  2:590266/91‑1 (MQ=255)

                                                                      aCAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCt                      >  2:819107/1‑91 (MQ=255)

                                                                       cAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCtt                     <  1:3191221/91‑1 (MQ=255)

                                                                        aGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCttt                    <  1:2705383/91‑1 (MQ=255)

                                                                        aGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCttt                    <  1:1948097/91‑1 (MQ=255)

                                                                         ggTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTa                   >  1:2820593/1‑91 (MQ=255)

                                                                         ggTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTa                   <  2:1068113/91‑1 (MQ=255)

                                                                          gTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTaa                  >  2:1468124/1‑91 (MQ=255)

                                                                            gagaAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAg                >  1:3207084/1‑91 (MQ=255)

                                                                            gagaAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAg                >  2:2486735/1‑91 (MQ=255)

                                                                             agaAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGt               <  2:3470171/91‑1 (MQ=255)

                                                                                 aGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGAt           <  1:3491188/91‑1 (MQ=255)

                                                                                 aGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGAt           >  1:295258/1‑91 (MQ=255)

                                                                                 aGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGAt           >  2:1121854/1‑91 (MQ=255)

                                                                                 aGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGAt           >  1:2127236/1‑91 (MQ=255)

                                                                                 aGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGAt           >  2:3867115/1‑91 (MQ=255)

                                                                                 aGTCAATGTTAGTCCGTTAAAAACAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTAAt           <  2:2968474/91‑1 (MQ=255)

                                                                                  gTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTACTCCAGAACCGTCCTTTAAAGTTGATg          <  2:2208067/91‑1 (MQ=255)

                                                                                  gTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATg          >  2:1589107/1‑91 (MQ=255)

                                                                                    cAATGTTAGTCCGTTAAAAATAGGACaacattgactttctcacctgtagcatacactgaaacgatttcttcacgtttagttgaaacaatgt        <  1:3461133‑M2/91‑66 (MQ=255)

                                                                                    cAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGt        <  1:2042974/91‑1 (MQ=255)

                                                                                      aTGTTgtcctatttttaacggactaacattgactttctcacctggagcatacactgaaacgatttcttcacgtttagttgaaacaatgtaa      <  1:3077546‑M1/91‑87 (MQ=255)

                                                                                      aTGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTaa      >  1:2539671/1‑91 (MQ=255)

                                                                                       tgttgtcctatttttaacggactaacattgactttctcacctgtagcatacactgaaacgatttcttcacgtttagttgaaacaatgtaat     <  1:3405389‑M1/91‑88 (MQ=255)

                                                                                        gttgtcctatttttaacggactaacattgactttctcacctgtagcatacactgaaacgatttcttcacgtttagttgaaacaatgtaata    <  1:2120280‑M1/91‑89 (MQ=255)

                                                                                        gttgtcctatttttaacggactaacattgactttctcacctgtagcatacactgaaacgatttcttcacgtttagttgaaacaatgtaata    <  1:929397‑M1/91‑89 (MQ=255)

                                                                                        gttgtcctatttttaacggactaacattgactttctcacctgtagcatacactgaaacgatttcttcacgtttagttgaaacaatgtaata    <  2:3176881‑M1/91‑89 (MQ=255)

                                                                                        gTTAGTCCGTTAAAAATAGGACaacattgactttctcacctgtagcatacactgaaacgatttcttcacgtttagttgaaacaatgtaata    <  1:2020167‑M2/91‑70 (MQ=255)

                                                                                         ttAGTCCGTTAAAAATAGGACaacattgactttctcacctgtagcatacactgaaacgatttcttcacgtttagttgaaacaatgtaataa   <  1:2214011‑M2/91‑71 (MQ=255)

                                                                                          tAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTaaaaaa  <  2:1397222/91‑1 (MQ=255)

TGTGTTTAAAGACAAAAACAGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAA  >  USA300TCH1516_ALE/1129830‑1130010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.