BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1129920	179 (0.940)	14 (0.080)	9/148	NT	7.3%	coding (372/1038 nt)	USA300HOU_RS05585	hypothetical protein
*	?	USA300TCH1516_ALE	= 1129939	188 (1.070)	14 (0.080)	9/148	NT	7.3%	coding (391/1038 nt)	USA300HOU_RS05585	hypothetical protein

Only 100 of 238 total aligned reads displayed.

AGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGAACTTTCAG  >  USA300TCH1516_ALE/1129849‑1130029

aGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGac                                                                                            <  1:1634383/91‑1 (MQ=255)

 gTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACa                                                                                           >  2:3325634‑M2/1‑90 (MQ=255)

 gTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACa                                                                                           <  1:3341016‑M2/91‑2 (MQ=255)

  ttattaCATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACaa                                                                                          >  2:2728151‑M2/1‑89 (MQ=255)

     ttaCATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTCCAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACaacat                                                                                       <  1:3077546‑M2/91‑6 (MQ=255)

         aTTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTg                                                                                   <  1:1290026/91‑1 (MQ=255)

         aTTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTg                                                                                   <  2:1274478/91‑1 (MQ=255)

          ttGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGc                                                                                  <  2:557896/91‑1 (MQ=255)

            gTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAg                                                                                <  1:2229246/91‑1 (MQ=255)

             tttCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGa                                                                               >  1:1061167/1‑91 (MQ=255)

             tttCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGa                                                                               <  1:117635/91‑1 (MQ=255)

             tttCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGa                                                                               <  2:1913510/91‑1 (MQ=255)

              ttCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGaa                                                                              >  1:982559/1‑91 (MQ=255)

                 aaCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAtt                                                                           >  1:1881613/1‑91 (MQ=255)

                 aaCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAtt                                                                           >  2:1047376/1‑91 (MQ=255)

                 aaCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAtt                                                                           >  2:1482204/1‑91 (MQ=255)

                  aCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttt                                                                          >  1:1378061/1‑91 (MQ=255)

                  aCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttt                                                                          >  2:2657905/1‑91 (MQ=255)

                  aCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttt                                                                          >  1:3540434/1‑91 (MQ=255)

                  aCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttt                                                                          >  1:2188097/1‑91 (MQ=255)

                  aCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttt                                                                          <  1:1732647/91‑1 (MQ=255)

                  aCTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttt                                                                          >  1:1254998/1‑91 (MQ=255)

                   cTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAtttt                                                                         <  2:526569/91‑1 (MQ=255)

                    tAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAAttttt                                                                        <  1:705771/91‑1 (MQ=255)

                     aaaCGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTa                                                                       <  2:45285/91‑1 (MQ=255)

                      aaCGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTaa                                                                      <  2:904270/91‑1 (MQ=255)

                      aaCGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTaa                                                                      <  1:2963569/91‑1 (MQ=255)

                      aaCGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTaa                                                                      <  1:2963789/91‑1 (MQ=255)

                         gTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCa                                                                   >  2:3490791/1‑91 (MQ=255)

                          tGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCAt                                                                  >  1:2349469/1‑91 (MQ=255)

                          tGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCAt                                                                  >  2:3387166/1‑91 (MQ=255)

                          tGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATCTTTAATCAt                                                                  >  2:2590684/1‑91 (MQ=255)

                           gaagaaATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATa                                                                 >  1:448236/1‑91 (MQ=255)

                           gaagaaATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATa                                                                 >  2:2379235/1‑91 (MQ=255)

                            aagaaATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATAc                                                                <  1:2627180/91‑1 (MQ=255)

                            aagaaATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATAc                                                                >  1:208908/1‑91 (MQ=255)

                             agaaATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACa                                                               <  2:814018/91‑1 (MQ=255)

                              gaaATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACaa                                                              >  1:535848/1‑91 (MQ=255)

                              gaaATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACaa                                                              <  2:2549149/91‑1 (MQ=255)

                              gaaATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACaa                                                              >  1:1960226/1‑91 (MQ=255)

                              gaaATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACaa                                                              <  2:967049/91‑1 (MQ=255)

                               aaaTCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAg                                                             >  2:2146364/1‑91 (MQ=255)

                               aaaTCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAg                                                             >  1:2769858/1‑91 (MQ=255)

                               aaaTCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAg                                                             >  1:1102902/1‑91 (MQ=255)

                                aaTCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGt                                                            <  2:2296973/91‑1 (MQ=255)

                                   cGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTAtt                                                         <  1:870895/91‑1 (MQ=255)

                                     tttCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTaa                                                       >  2:474530/1‑91 (MQ=255)

                                       tCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAg                                                                                <  1:501316/64‑1 (MQ=255)

                                       tCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATc                                                     >  1:2972525/1‑91 (MQ=255)

                                        cAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATcc                                                    <  1:1681070/91‑1 (MQ=255)

                                        cAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATcc                                                    <  1:454397/91‑1 (MQ=255)

                                         aGTGTATGCTACAGGTAAGAAAGTCAATGTTAGTCCGCAAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGAATTAATcaa                                                   >  2:1692863/1‑89 (MQ=255)

                                          gtgtATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAg                                                  <  2:1877129/91‑1 (MQ=255)

                                             tATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAAc                                               >  1:2755840/1‑91 (MQ=255)

                                              aTGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAAcc                                              <  2:318054/91‑1 (MQ=255)

                                               tGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCg                                             <  2:3798040/91‑1 (MQ=255)

                                                  tACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTcc                                          <  2:1540628/91‑1 (MQ=255)

                                                   aCAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCt                                         <  1:362188/91‑1 (MQ=255)

                                                    cAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCtt                                        <  1:1230982/91‑1 (MQ=255)

                                                      ggTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTa                                      >  1:2820593/1‑91 (MQ=255)

                                                       gTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTaa                                     >  2:1468124/1‑91 (MQ=255)

                                                         gagaAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAg                                   >  1:3207084/1‑91 (MQ=255)

                                                           gaAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGtt                                 >  2:1783459/1‑91 (MQ=255)

                                                            aaaGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTg                                >  1:1203966/1‑91 (MQ=255)

                                                              aGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGAt                              >  1:295258/1‑91 (MQ=255)

                                                              aGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGAt                              >  2:1121854/1‑91 (MQ=255)

                                                              aGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGAt                              >  1:2127236/1‑91 (MQ=255)

                                                              aGTCAATGTTAGTCCGTTAAAAACAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTAAt                              <  2:2968474/91‑1 (MQ=255)

                                                               gTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTACTCCAGAACCGTCCTTTAAAGTTGATg                             <  2:2208067/91‑1 (MQ=255)

                                                                tCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATgg                            >  1:3276182/1‑91 (MQ=255)

                                                                 cAATGTTAGTCCGTTAAAAATAGGACaacattgactttctcacctgtagcatacactgaaacgatttcttcacgtttagttgaaacaatgt                           <  1:3461133‑M2/91‑66 (MQ=255)

                                                                  aaTGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTa                          >  2:38796/1‑91 (MQ=255)

                                                                    tGTTAGTCCGTTAAAAATAGGACaacattgactttctcacctgtagcatacactgaaacgatttcttcacgtttagttgaaacaatgtaat                        <  2:68024‑M2/91‑69 (MQ=255)

                                                                    tGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTaaa                        >  1:809980/1‑91 (MQ=255)

                                                                       tAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTaaaaaa                     <  2:1397222/91‑1 (MQ=255)

                                                                       tAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTaaaaaa                     <  1:3372531/91‑1 (MQ=255)

                                                                        aGTCCGTTAAAAATAGGACaacattgactttctcacctgtagcatacactgaaacgatttcttcacgtttagttgaaacaatgtaataact                    <  1:2557512‑M2/91‑73 (MQ=255)

                                                                         gTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAata                   <  2:3851399/91‑1 (MQ=255)

                                                                           ccGTTAAAAATAGGACaacattgactttctcacctgtagcatacactgaaacgatttcttcacgtttagttgaaacaatgtaataactgtt                 <  1:398085‑M2/91‑76 (MQ=255)

                                                                           ccGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATg                 >  2:2757389/1‑91 (MQ=255)

                                                                           ccGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCATTAAAGTTGATGGTAAAAAATATg                 >  2:3603610/1‑91 (MQ=255)

                                                                            cGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGa                >  2:3170414/1‑91 (MQ=255)

                                                                              ttAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAAt              <  1:2886891/91‑1 (MQ=255)

                                                                               tAAAAATAGGACAACATTCTGCAGAAATTTTTAGTCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAAtt             <  1:3176881/91‑1 (MQ=255)

                                                                               tAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAAtt             <  2:1338807/91‑1 (MQ=255)

                                                                                  aattAGGATAACATTCTAAAGAAATTTTTAATCATACAATTATTAATCAAAAACCGTCTTTTAAATTTTATGGTCAAAAATACGAATTTGa          >  2:160556/4‑91 (MQ=255)

                                                                                  aaaTAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGa          <  2:792945/91‑1 (MQ=255)

                                                                                  aaaTAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGa          <  1:3166547/91‑1 (MQ=255)

                                                                                  aaaTAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGa          >  2:2088094/1‑91 (MQ=255)

                                                                                  aaaTAGGACAACATTCTGCAGAAATTTTTAATAATACAAGTATTAATCCAGAACAGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGa          >  2:1787386/1‑91 (MQ=255)

                                                                                   aaTAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGaa         >  1:2323935/1‑91 (MQ=255)

                                                                                   aaTAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGaa         >  2:3150048/1‑91 (MQ=255)

                                                                                   aaTAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGaa         >  2:2020368/1‑91 (MQ=255)

                                                                                    aTAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGAAc        <  2:3100009/91‑1 (MQ=255)

                                                                                     tAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGAACt       <  1:2294607/91‑1 (MQ=255)

                                                                                      aGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGAACtt      <  2:463827/91‑1 (MQ=255)

                                                                                       ggACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGAACttt     >  1:2084592/1‑91 (MQ=255)

                                                                                         acaacaTTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGAACTTTCa   >  2:248698/1‑91 (MQ=255)

                                                                                         acaacaTTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGAACTTTCa   <  2:2399655/91‑1 (MQ=255)

                                                                                          caacaTTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGAACTTTCAg  <  1:1041578/91‑1 (MQ=255)

AGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAGAAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACAAGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGAACTTTCAG  >  USA300TCH1516_ALE/1129849‑1130029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.