BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1134014 =	231 (1.210)	12 (0.080)	5/132	NT	6.6%	intergenic (+8/+54)	coaD/USA300HOU_RS05620	Phosphopantetheine adenylyltransferase/Nicotinamide‑nucleotide adenylyltransferase
*	?	USA300TCH1516_ALE	1134060 =	147 (0.940)	12 (0.080)	5/132	NT	6.6%	intergenic (+54/+8)	coaD/USA300HOU_RS05620	Phosphopantetheine adenylyltransferase/Nicotinamide‑nucleotide adenylyltransferase

Only 100 of 318 total aligned reads displayed.

AAGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCT  >  USA300TCH1516_ALE/1133924‑1134104

caaagcaacacacatatacaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaa                                                                                            <  1:197708‑M1/1‑1 (MQ=255)

caaagcaacacacatatacaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaa                                                                                            <  2:811883‑M1/1‑1 (MQ=255)

caaagcaacacacatatacaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaa                                                                                            <  1:3204765‑M1/1‑1 (MQ=255)

 aaagcaacacacatatacaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaaa                                                                                           >  1:1024742‑M1/90‑91 (MQ=255)

   agcaacacacatatacaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaAACa                                                                                         >  2:3251637‑M1/88‑91 (MQ=255)

     gTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGt                                                                                       >  1:2651157/1‑91 (MQ=255)

     gTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGt                                                                                       >  1:2846975/1‑91 (MQ=255)

     gTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGt                                                                                       <  1:3073332/91‑1 (MQ=255)

      ttGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTa                                                                                      >  1:2213465/1‑91 (MQ=255)

      ttGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTa                                                                                      >  1:2918033/1‑91 (MQ=255)

      aacacacatatacaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaAACAGTa                                                                                      <  2:2750568‑M1/7‑1 (MQ=255)

      aacacacatatacaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaAACAGTa                                                                                      <  1:2515446‑M1/7‑1 (MQ=255)

       tGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTAt                                                                                     <  2:109925/91‑1 (MQ=255)

        gCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTAtt                                                                                    <  1:1726144/91‑1 (MQ=255)

        gCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTAtt                                                                                    >  1:2393989/1‑91 (MQ=255)

        gCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTAtt                                                                                    <  2:1351783/91‑1 (MQ=255)

         cAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTAttt                                                                                   >  1:1962553/1‑91 (MQ=255)

         cAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTAttt                                                                                   >  2:3097474/1‑91 (MQ=255)

          cacatatacaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaAACAGTAtttt                                                                                  <  1:94765‑M1/11‑1 (MQ=255)

          cacatatacaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaAACAGTAtttt                                                                                  <  1:91781‑M1/11‑1 (MQ=255)

          cacatatacaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaAACAGTAtttt                                                                                  <  1:2817717‑M1/11‑1 (MQ=255)

          aGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTAtttt                                                                                  >  2:3016198/1‑91 (MQ=255)

           gCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTa                                                                                 >  2:1007364/1‑91 (MQ=255)

           gCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTa                                                                                 >  1:3457041/1‑91 (MQ=255)

            catatacaatgcaataagcgggcaacaacaaacagatttcaacacggctgtcatacagcaatatcgttaacaaatgaaAACAGTATTTTAg                                                                                <  1:3097474‑M1/13‑1 (MQ=255)

            cTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGACGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAg                                                                                >  2:1950025/1‑91 (MQ=255)

            cTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAg                                                                                <  2:2680773/91‑1 (MQ=255)

             ttgtCGAGCAGGTATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTGAGTAATAAAAATAACAGTATTTTAgg                                                                               <  2:3206592/88‑1 (MQ=255)

             ttATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAgg                                                                               <  2:1126602/91‑1 (MQ=255)

             atatccaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaAACAGTATTTTAgg                                                                               >  1:2153288‑M1/78‑91 (MQ=255)

             atatacaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaAACAGTATTTTAgg                                                                               >  1:128489‑M1/78‑91 (MQ=255)

             atatacaatgcaataagcgggcaacaacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaAACAGTATTTTAgg                                                                               >  1:773049‑M1/78‑91 (MQ=255)

              tATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGt                                                                              >  2:190500/1‑91 (MQ=255)

               aTCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGtt                                                                             <  2:402883/91‑1 (MQ=255)

               aTCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGtt                                                                             <  2:3106290/91‑1 (MQ=255)

                  gAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTAt                                                                          >  2:3018779/1‑91 (MQ=255)

                  gAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTAt                                                                          >  2:2356234/1‑91 (MQ=255)

                  gAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTCTAt                                                                          >  1:738347/1‑91 (MQ=255)

                    gCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCa                                                                        >  1:3251567/1‑91 (MQ=255)

                       gATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATgg                                                                     <  2:3737973/91‑1 (MQ=255)

                       gATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATgg                                                                     >  2:2850321/1‑91 (MQ=255)

                          atTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGttt                                                                  <  1:3695304/91‑1 (MQ=255)

                           tttCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTa                                                                 >  1:3768596/1‑91 (MQ=255)

                           tttCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTa                                                                 >  1:647704/1‑91 (MQ=255)

                            ttCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTAc                                                                >  1:3531614/1‑91 (MQ=255)

                            ttCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTAc                                                                <  2:3774486/91‑1 (MQ=255)

                            ttCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTAc                                                                >  1:1114711/1‑91 (MQ=255)

                                 aaTTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATcc                                                           >  2:3525909/1‑91 (MQ=255)

                                 aaTTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATcc                                                           >  1:2485833/1‑91 (MQ=255)

                                    tCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCtgg                                                        <  1:862061/91‑3 (MQ=255)

                                    tCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTaa                                                        <  1:1001116/91‑1 (MQ=255)

                                     cGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTaaa                                                       >  2:1368468/1‑91 (MQ=255)

                                      gTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTaaaa                                                      >  2:2515446/1‑91 (MQ=255)

                                      aacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaAACAGTATTTTAGGTTTATCATGGTTTACAATCCTaaaa                                                      >  1:3423153‑M1/53‑91 (MQ=255)

                                      aacaaacagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaAACAGTATTTTAGGTTTATCATGGTTTACAATCCTaaaa                                                      >  1:1340070‑M1/53‑91 (MQ=255)

                                         ccACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATAc                                                   >  1:9371/1‑91 (MQ=255)

                                          cACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACt                                                  <  2:582377/91‑1 (MQ=255)

                                          cACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACt                                                  >  2:3828727/1‑91 (MQ=255)

                                           aCCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTg                                                 <  2:3349087/91‑1 (MQ=255)

                                           aCCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTg                                                 <  2:1452018/91‑1 (MQ=255)

                                           aCCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTg                                                 >  1:449699/1‑91 (MQ=255)

                                            cagatttcaacacgcctgtcatacagcaatatcgttaacaaatgaaAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGt                                                >  2:1276625‑M1/47‑91 (MQ=255)

                                             cTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGtt                                               <  1:2563379/91‑1 (MQ=255)

                                                aTGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTc                                            <  2:3651860/91‑1 (MQ=255)

                                                   ttGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCAtt                                         >  1:1904518/1‑91 (MQ=255)

                                                   ttGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCAtt                                         >  1:2353685/1‑91 (MQ=255)

                                                   ttGAAAAGGCATTGAAGAAGAAATGTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCAtt                                         <  2:3605412/91‑1 (MQ=255)

                                                    tGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCAttt                                        >  1:279164/1‑91 (MQ=255)

                                                    tGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCAttt                                        <  1:1879300/91‑1 (MQ=255)

                                                    tGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCAttt                                        >  2:643805/1‑91 (MQ=255)

                                                     gAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTg                                       >  2:1086317/1‑91 (MQ=255)

                                                     gAAAAGGCATTGAAGAAGAAATTTAAATAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTg                                       >  2:2207636/1‑91 (MQ=255)

                                                      aaaaGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGt                                      >  1:494445/1‑91 (MQ=255)

                                                      aaaaGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGt                                      <  1:3653735/91‑1 (MQ=255)

                                                       aaaGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGtt                                     >  1:1623041/1‑91 (MQ=255)

                                                       aaaGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGtt                                     >  1:1445430/1‑91 (MQ=255)

                                                        aaGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTa                                    <  1:317524/91‑1 (MQ=255)

                                                        aaGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTa                                    <  1:357607/91‑1 (MQ=255)

                                                           gCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACg                                 >  2:2537/1‑91 (MQ=255)

                                                            cATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGa                                <  1:1558306/91‑1 (MQ=255)

                                                            cATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGa                                <  2:2593189/91‑1 (MQ=255)

                                                              ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGata                              >  1:3343428/1‑91 (MQ=255)

                                                              ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGata                              >  2:2890390/1‑91 (MQ=255)

                                                              ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGata                              <  2:2226094/91‑1 (MQ=255)

                                                              ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGata                              <  2:2095247/91‑1 (MQ=255)

                                                                  agaagaaATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGc                          >  1:2688787/1‑91 (MQ=255)

                                                                   gaagaaATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCt                         <  2:2464244/91‑1 (MQ=255)

                                                                     agaaATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGt                       >  2:1647717/1‑91 (MQ=255)

                                                                        aaTTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATg                    <  2:1116518/91‑1 (MQ=255)

                                                                        aaTTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATg                    >  1:2976532/1‑91 (MQ=255)

                                                                        aaTTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATg                    >  2:892250/1‑91 (MQ=255)

                                                                          tttAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGAc                  >  2:1218816/1‑91 (MQ=255)

                                                                           ttAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACa                 <  2:1733058/91‑1 (MQ=255)

                                                                            tAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAg                >  2:496911/1‑91 (MQ=255)

                                                                              aGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGc              <  2:3435306/91‑1 (MQ=255)

                                                                                 aataaAAATAACAGTATTTTAGATTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCgtg           <  2:3131686/91‑1 (MQ=255)

                                                                                     aaaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGa       <  1:3622102/91‑1 (MQ=255)

                                                                                      aaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGaa      >  1:2108885/1‑91 (MQ=255)

                                                                                       aaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGaaa     <  2:2926242/91‑1 (MQ=255)

                                                                                          AACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCt  <  2:1872139‑M1/91‑1 (MQ=255)

AAGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCT  >  USA300TCH1516_ALE/1133924‑1134104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.